Publications 1995 - 1999

  • Structure and mechanism of formation of the H-y5 isomer of an intramolecular DNA triple helix
    M. J. P. van Dongen, J. F. Doreleijers, G. A. van der Marel, J. H. van Boom, C. W. Hilbers and S. S. Wijmenga
    Nature Structural Biology 6 (1999) 854-859
  • Structure of the 3 '-hairpin of the TYMV pseudoknot: preformation in RNA folding
    M. H. Kolk, M. van der Graaf, C. T. M. Fransen, S. S. Wijmenga, C. W. A. Pleij, H. A. Heus and C. W. Hilbers
    Embo Journal 17 (1998) 7498-7504
  • On the NMR structure determination of a 44n RNA pseudoknot: Assignment strategies and derivation of torsion angle restraints
    M. H. Kolk, S. S. Wijmenga, H. A. Heus and C. W. Hilbers
    Journal Of Biomolecular Nmr 12 (1998) 423-433
  • NMR structure of a classical pseudoknot: Interplay of single- and double-stranded RNA
    M. H. Kolk, M. van der Graaf, S. S. Wijmenga, C. W. A. Pleij, H. A. Heus and C. W. Hilbers

    Science 280 (1998) 434-438
  • Backbone dynamics of azurin in solution: Slow conformational change associated with deprotonation of histidine 35
    A. P. Kalverda, M. Ubbink, G. Gilardi, S. S. Wijmenga, A. Crawford, L. J. C. Jeuken and G. W. Canters
    Biochemistry 38 (1999) 12690-12697
  • A high-resolution HCANH experiment with enhanced sensitivity via multiple quantum line narrowing
    G. Larsson, S. S. Wijmenga and J. Schleucher
    Journal Of Biomolecular Nmr 14 (1999) 169-174
  • The solution structure of the homeodomain of the rat insulin-gene enhancer protein Isl-1. Comparison with other homeodomains
    H. Ippel, G. Larsson, G. Behravan, J. Zdunek, M. Lundqvist, J. Schleucher, P. O. Lycksell and S. Wijmenga
    Journal Of Molecular Biology 288 (1999) 689-703
  • The use of NMR methods for conformational studies of nucleic acids
    S. S. Wijmenga and B. N. M. van Buuren
    Progress In Nuclear Magnetic Resonance Spectroscopy 32 (1998) 287-387
  • The EH1 domain of Eps15 is structurally classified as a member of the S100 subclass of EF-hand-containing proteins
    B. Whitehead, M. Tessari, A. Carotenuto, P.M.P. ve Henegouwen and G. W. Vuister
    Biochemistry 38 (1999) 11271-1127
  • Letter to the Editor: Sequence-specific H-1, C-13 and N-15 assignment and secondary structure of the apo EH2 domain of mouse Eps15
    A. Carotenuto, M. Tessari, B. Whitehead, J. M. A. Aelen, P.M.P. ve Henegouwen and G. W. Vuister
    Journal Of Biomolecular Nmr 14 (1999) 97-98
  • Sequence-specific H-1, C-13 and N-15 assignment of the EH1 domain of mouse Eps15
    B. Whitehead, M. Tessari, H. H. Versteeg, S. van Delft, P.M.P. ve Henegouwen and G. W. Vuister
    Journal Of Biomolecular Nmr 12 (1998) 465-466
  • 1H, 13C and 15N assignment of the Isl-1 homeodomain
    J. H. Ippel, G. Larsson, G. Behravan, M. Lundqvist, P. O. Lycksell, J. Schleucher, J. Zdunek and S. S. Wijmenga
    J Biomol NMR 12 (1998) 357-9
  • Analysis of H-1 chemical shifts in DNA: Assessment of the reliability of H-1 chemical shift calculations for use in structure refinement
    S. S. Wijmenga, M. Kruithof and C. W. Hilbers
    Journal Of Biomolecular Nmr 10 (1997) 337-350
  • The detailed structure of tandem G-A mismatched base-pair motifs in RNA duplexes is context dependent
    H. A. Heus, S. S. Wijmenga, H. Hoppe and C. W. Hilbers

    Journal Of Molecular Biology 271 (1997) 147-158
  • The structure of the isolated, central hairpin of the HDV antigenomic ribozyme: Novel structural features and similarity of the loop in the ribozyme and free in solution
    M. H. Kolk, H. A. Heus and C. W. Hilbers
    EMBO Journal 16 (1997) 3685-3692
  • Structural features of the DNA hairpin d(ATCCTA-GTTA-TAGGAT): Formation of a G-A base pair in the loop
    M. J. P. van Dongen, M. M. W. Mooren, E. F. A. Willems, G. A. van der Marel, J. H. van Boom, S. S. Wijmenga and C. W. Hilbers
    Nucleic Acids Research 25 (1997) 1537-1547
  • Doubly sensitivity-enhanced 3D HCCH-TOCSY of C-13-labeled proteins in H2O using heteronuclear cross polarization and pulsed field gradients
    S. S. Wijmenga, E. Steensma and C. P. M. van Mierlo
    Journal Of Magnetic Resonance 124 (1997) 459-467
  • Heteronuclear NMR studies of the combined Src homology domains 2 and 3 of pp60 c-Src: Effects of phosphopeptide binding
    M. Tessari, L. N. Gentile, S. J. Taylor, D. I. Shalloway, L. K. Nicholson and G. W. Vuister

    Biochemistry 36 (1997) 14561-14571
  • Quantitative measurement of relaxation interference effects between H-1(N) CSA and H-1-N-15 dipolar interaction: Correlation with secondary structure
    M. Tessari, H. Vis, R. Boelens, R. Kaptein and G. W. Vuister
    Journal Of The American Chemical Society 119 (1997) 8985-8990
  • Determination of amide proton CSA in N-15-labeled proteins using H-1 CSA/N-15-H-1 dipolar and N-15 CSA/N-15-H-1 dipolar cross-correlation rates
    M. Tessari, F. A. A. Mulder, R. Boelens and G. W. Vuister
    Journal Of Magnetic Resonance 127 (1997) 128-133
  • A N-15-filtered 2D H-1 TOCSY experiment for assignment of aromatic ring resonances and selective identification of tyrosine ring resonances in proteins: Description and application to photoactive yellow protein
    B. Whitehead, M. Tessari, P. Dux, R. Boelens, R. Kaptein and G. W. Vuister
    Journal Of Biomolecular Nmr 9 (1997) 313-316
  • MR studies of the contiguous SH3-SH2 domains from PP60(C-SRC), free and complexed with a high-affinity phosphopeptide
    L. K. Nicholson, M. Tessari, L. N. Gentile and G. Vuister
    Biophysical Journal 72 (1997) TU384-TU384
  • RNA aptamers
    H. A. Heus
    Nature Structural Biology 4 (1997) 597-600
  • Heteronuclear scalar couplings in the bases and sugar rings of nucleic acids: Their determination and application in assignment and conformational analysis
    J. H. Ippel, S. S. Wijmenga, R. de Jong, H. A. Heus, C. W. Hilbers, E. de Vroom, G. A. van der Marel and J. H. van Boom
    Magnetic Resonance In Chemistry 34 (1996) S156-S176
  • The transition from a neutral-pH double helix to a low-pH triple helix induces a conformational switch in the CCCG tetraloop closing a Watson-Crick stem
    M. J. P. van Dongen, S. S. Wijmenga, G. A. van der Marel, J. H. van Boom and C. W. Hilbers
    Journal Of Molecular Biology 263 (1996) 715-729
  • Through-bond correlation of adenine H2 and H8 protons in unlabeled DNA fragments by HMBC spectroscopy
    M. J. P. van Dongen, S. S. Wijmenga, R. Eritja, F. Azorin and C. W. Hilbers
    Journal Of Biomolecular Nmr 8 (1996) 207-212
  • Unambiguous structure characterization of a DNA-RNA triple helix by N-15- and C-13-filtered NOESY spectroscopy
    M. J. P. van Dongen, H. A. Heus, S. S. Wijmenga, G. A. van der Marel, J. H. van Boom and C. W. Hilbers

    Biochemistry 35 (1996) 1733-1739
  • Doubly sensitivity-enhanced 3D TOCSY-HSQC
    S. S. Wijmenga, C. P. M. van Mierlo and E. Steensma
    Journal Of Biomolecular Nmr 8 (1996) 319-330
  • Possible role of a short extra loop of the long-chain flavodoxin from Azotobacter chroococcum in electron transfer to nitrogenase: Complete H-1, N-15 and C-13 backbone assignments and secondary solution structure of the flavodoxin
    S. Peelen, S. S. Wijmenga, P. J. A. Erbel, R. L. Robson, R. R. Eady and J. Vervoort
    Journal Of Biomolecular Nmr 7 (1996) 315-330
  • The copper-topaquinone-phenylhydrazine-adduct geometry in Escherichia coli amine oxidase derivatized with phenylhydrazines substituted with trifluoromethyl groups, as determined with F-19-NMR relaxation measurements
    V. Steinebach, G. A. H. De Jong, S. S. Wijmenga, S. De Vries and J. A. Duine
    European Journal Of Biochemistry 238 (1996) 683-689
  • N-15-NMR study of ammonium assimilation in Agaricus bisporus
    J. J. P. Baars, H.J.M. op denCamp, C. van der Drift, J. J. M. Joordens, S. S. Wijmenga, L.J.L.D. van Griensven and G. D. Vogels
    Biochimica Et Biophysica Acta-Molecular Cell Research 1310 (1996) 74-80
  • Initial NMR analysis of contiguous SH3-SH2 domains from PP60C-SCR
    L. Gentile, M. Tessari, G. Vuister and L. Nicholson
    Biophysical Journal 70 (1996) SU167-SU167
  • A network of heterogeneous hydrogen bonds in GNRA tetraloops
    F. M. Jucker, H. A. Heus, P. F. Yip, E. H. M. Moors and A. Pardi
    Journal Of Molecular Biology 264 (1996) 968-980
  • Through-bond correlation of adenine H2 and H8 protons in unlabeled DNA fragments by HMBC spectroscopy
    M. J. van Dongen, S. S. Wijmenga, R. Eritja, F. Azorin and C. W. Hilbers
    J Biomol NMR 8 (1996) 207-12
  • Nmr Structural Studies Of Rna Molecules Using C-13-N-15 Labeled Rna
    H. A. Heus, S. S. Wijmenga and C. W. Hilbers

    Journal Of Cellular Biochemistry (1995) 59-59
  • Nmr-Studies On An Hdv Ribozyme Model
    M. H. Kolk, H. A. Heus and C. W. Hilbers
    Journal Of Cellular Biochemistry (1995) 60-60
  • Structural Studies On Triple Helices
    M. J. P. Van dongen, H. A. Heus, G. A. Van der marel, J. H. Van boom, S. S. Wijmenga and C. W. Hilbers
    Journal Of Cellular Biochemistry (1995) 65-65
  • Sequential Backbone Assignment Of Uniformly C-13-Labeled Rnas By A 2-Dimensional P(CC)H-Tocsy Triple-Resonance Nmr Experiment
    S. S. Wijmenga, H. A. Heus, H. A. E. Leeuw, H. Hoppe, M. Van der graaf and C. W. Hilbers
    Journal Of Biomolecular NMR 5 (1995) 82-86
  • Identification Of Topaquinone, As Illustrated For Pig-Kidney Diamine Oxidase And Escherichia-Coli Amine Oxidase
    V. Steinebach, B. W. Groen, S. S. Wijmenga, W. M. A. Niessen, J. A. Jongejan and J. A. Duine
    Analytical Biochemistry 230 (1995) 159-166
  • Irradiated (15N)DNA as an internal standard for analysis of base-oxidized DNA constituents by isotope dilution mass spectrometry
    A. J. Teixeira, J. C. Klein, H. A. Heus and A. P. de Jong

    Analytical Chemistry 67 (1995) 399-404