Publications 2000 - 2005

• NMR spectroscopic determination of the solution structure of a branched nucleic acid from residual dipolar couplings by using isotopically labeled nucleotides
  B. N. M. van Buuren, J. Schleucher, V. Wittmann, C. Griesinger, H. Schwalbe and S. S. Wijmenga
  Angewandte Chemie-International Edition 43 (2004) 187-192

• Probing solvent accessibility of transthyretin amyloid by solution NMR spectroscopy
  A. Olofsson, J. H. Ippel, S. S. Wijmenga, E. Lundgren and A. Ohman
  Journal Of Biological Chemistry 279 (2004) 5699-5707

• Evidence for a base triple in the free HIV-1 TAR RNA
  H. Huthoff, F. Girard, S. S. Wijmenga and B. Berkhout
  RNA 10 (2004) 412-423

• Global structure of a DNA three-way junction by solution NMR: towards prediction of 3H fold
  B. Wu, F. Girard, B. van Buuren, J. Schleucher, M. Tessari and S. Wijmenga
  Nucleic Acids Research 32 (2004) 3228-3239

• Backbone dynamics of a symmetric calmodulin dimer in complex with the calmodulin-binding domain of the basic-helix-loop-helix transcription factor SEF2-1/E2-2: A highly dynamic complex
  G. Larsson, J. Schleucher, J. Onions, S. Hermann, T. Grundstrom and S. S. Wijmenga
  Biophysical Journal 89 (2005) 1214-1226

• Cold shock domain of the human Y-box protein YB-1. Backbone dynamics and equilibrium between the native state and a partially unfolded state
  C.P.A.M. Kloks, M. Tessari, G. W. Vuister and C. W. Hilbers
  Biochemistry 43 (2004) 10237-10246

• Novel application of sRNA: Stimulation of ribosomal frameshifting
  R. C. L. Olsthoorn, M. Laurs, F. Sohet, C. W. Hilbers, H. A. Heus and C. W. A. Pleij
  RNA 10 (2004) 1702-1703

• Structures of non-canonical tandem base pairs in RNA helices: Review
  H. A. Heus and C. W. Hilbers
  Nucleosides Nucleotides & Nucleic Acids 22 (2003) 559-571

• Structure of the pyrimidine-rich internal loop in the poliovirus 3 '-UTR: The importance of maintaining pseudo-2-fold symmetry in RNA helices containing two adjacent non-canonical base-pairs
  E.M.H.P. Lescrinier, M. Tessari, F. J. M. van Kuppeveld, W. J. G. Melchers, C. W. Hilbers and H. A. Heus
  Journal Of Molecular Biology 331 (2003) 759-769

• Detection of nano-second internal motion and determination of overall tumbling times independent of the time scale of internal motion in proteins from NMR relaxation data
  G. Larsson, G. Martinez, J. Schleucher and S. S. Wijmenga
  Journal Of Biomolecular NMR 27 (2003) 291-312

• Global structure and dynamics of human apolipoprotein CII in complex with micelles: Evidence for increased mobility of the helix involved in the activation of lipoprotein lipase
  J. Zdunek, G. V. Martinez, J. Schleucher, P. O. Lycksell, Y. Yin, S. Nilsson, Y. Shen, G. Olivecrona and S. Wijmenga
  Biochemistry 42 (2003) 1872-1889

• The apical stem-loop of the hepatitis B virus encapsidation signal folds into a stable tri-loop with two underlying pyrimidine bulges
  S. Flodell, J. Schleucher, J. Cromsigt, H. Ippel, K. Kidd-Ljunggren and S. Wijmenga
  Nucleic Acids Research 30 (2002) 4803-4811

• Probing solvent accessibility of amyloid fibrils by solution NMR spectroscopy
  J. H. Ippel, A. Olofsson, J. Schleucher, E. Lundgren and S. S. Wijmenga
  Proceedings Of The National Academy Of Sciences USA 99 (2002) 8648-8653

• How to detect internal motion by homonuclear NMR
  J. Schleucher and S. S. Wijmenga
  Journal Of The American Chemical Society 124 (2002) 5881-5889

• Preparation of partially H-2/C-13-labelled RNA for NMR studies. Stereo-specific deuteration of the H5 '' in nucleotides
  J. Cromsigt, J. Schleucher, T. Gustafsson, J. Kihlberg and S. Wijmenga
  Nucleic Acids Research 30 (2002) 1639-1645

• Structure elucidation of the hepatitis B virus encapsidation signal by NMR on selectively labeled RNAs
  S. Flodell, J. Cromsigt, J. Schleucher, K. Kidd-Ljunggren and S. Wijmenga
  Journal Of Biomolecular Structure & Dynamics 19 (2002) 627-636

• Brownian-dynamics simulations of metal-ion binding to four-way junctions
  B. N. M. van Buuren, T. Hermann, S. S. Wijmenga and E. Westhof
  Nucleic Acids Research 30 (2002) 507-514

• A 3D doubly sensitivity enhanced X-filtered TOCSY-TOCSY experiment
  H. van Ingen, M. Tessari and G. W. Vuister
  Journal Of Biomolecular Nmr 24 (2002) 155-160

• A two-dimensional artifact from asynchronous decoupling
  H. van Ingen, G. W. Vuister and M. Tessari
  Journal Of Magnetic Resonance 156 (2002) 258-261

• Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL
  T. Walma, C.A.E.M. Spronk, M. Tessari, J. Aelen, J. Schepens, W. Hendriks and G. W. Vuister
  Journal Of Molecular Biology 316 (2002) 1101-1110

• Prediction of proton chemical shifts in RNA - Their use in structure refinement and validation
  J.A.M.T.C. Cromsigt, C. W. Hilbers and S. S. Wijmenga
  Journal Of Biomolecular NMR 21 (2001) 11-29

• Solution structure of the pseudoknot of SRV-1 RNA, involved in ribosomal frameshifting
  P. J. A. Michiels, A. A. M. Versleijen, P. W. Verlaan, C. W. A. Pleij, C. W. Hilbers and H. A. Heus
  Journal Of Molecular Biology 310 (2001) 1109-1123

• Structure of the ribozyme substrate hairpin of Neurospora VS RNA: A close look at the cleavage site
  P. J. A. Michiels, C. H. J. Schouten, C. W. Hilbers and H. A. Heus
  RNA 6 (2000) 1821-1832

• Solution structure of a HNA-RNA hybrid
  E. Lescrinier, R. Esnouf, J. Schraml, R. Busson, H. A. Heus, C. W. Hilbers and P. Herdewijn
  Chemistry & Biology 7 (2000) 719-731

• Solution structure of a RNA decamer duplex, containing 9-[2-O-(beta-D-ribofuranosyl)-beta-D-ribofuranosyl]adenine, a special residue in lower eukaryotic initiator tRNAs
  I. Luyten, R. M. Esnouf, S. N. Mikhailov, E. V. Efimtseva, P. Michiels, H. A. Heus, C. W. Hilbers and P. Herdewijn
  Helvetica Chimica Acta 83 (2000) 1278-1289

• Capture of a dimeric intermediate during transthyretin amyloid formation
  A. Olofsson, H. J. Ippel, V. Baranov, P. Horstedt, S. Wijmenga and E. Lundgren
  Journal Of Biological Chemistry 276 (2001) 39592-39599

• Resonance assignment and structure determination for RNA
  J. Cromsigt, B. van Buuren, J. Schleucher and S. Wijmenga
  Nuclear Magnetic Resonance Of Biologica Macromolecules, Pt A, vol. 338, 2001, 371-399.

• Mutational and structural analyses of the ribonucleotide reductase inhibitor Sml1 define its Rnr1 interaction domain whose inactivation allows suppression of Mec1 and Rad53 lethality
  X. L. Zhao, B. Georgieva, A. Chabes, V. Domkin, J. H. Ippel, J. Schleucher, S. Wijmenga, L. Thelander and R. Rothstein
  Molecular And Cellular Biology 20 (2000) 9076-9083

• A novel target recognition revealed by calmodulin in complex with the basic helix-loop-helix transcription factor SEF2-1/E2-2
  G. Larsson, J. Schleucher, J. Onions, S. Hermann, T. Grundstrom and S. S. Wijmenga
  Protein Science 10 (2001) 169-186

• Solution structure of a DNA three-way junction containing two unpaired thymidine bases. Identification of sequence features that decide conformer selection
  B. N. M. van Buuren, F. J. J. Overmars, J. H. Ippel, C. Altona and S. S. Wijmenga
  Journal Of Molecular Biology 304 (2000) 371-383

• Synthesis of specifically deuterated nucleotides for NMR studies on RNA
  J.A.M.T.C. Cromsigt, J. Schleucher, K. Kidd-Ljunggren and S. S. Wijmenga
  Journal Of Biomolecular Structure & Dynamics (2000) 211-219

• NMR structural studies on a DNA four-way junction: Stacking preference and localization of the metal-ion binding site
  B. N. M. van Buuren, J. Schleucher and S. S. Wijmenga
  Journal Of Biomolecular Structure & Dynamics (2000) 237-243

• Yeast ribonucleotide reductase has a heterodimeric iron-radical-containing subunit
  A. Chabes, V. Domkin, G. Larsson, A. M. Liu, A. Graslund, S. Wijmenga and L. Thelander
  Proceedings Of The National Academy Of Sciences Of The United States Of America 97 (2000) 2474-2479

• The Mad1-Sin3B interaction involves a novel helical fold
  C.A.E.M. Spronk, M. Tessari, A. M. Kaan, J. F. A. Jansen, M. Vermeulen, H. G. Stunnenberg and G. W. Vuister
  Nature Structural Biology 7 (2000) 1100-1104

• A novel experiment for the quantitative measurement of CSA(H-1(N))/CSA(N-15) cross-correlated relaxation in N-15-labeled proteins
  M. Tessari and G. W. Vuister
  Journal Of Biomolecular NMR 16 (2000) 171-174

• Sequence-specific assignment of the PAH2 domain of Sin3B free and bound to Mad1
  C. A. Spronk, J. F. Jansen, M. Tessari, A. M. Kaan, J. Aelen, E. Lasonder, H. G. Stunnenberg and G. W. Vuister
  J Biomol NMR 19 (2001) 377-8