Faculty of Science
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Structures and Relative Glycosidic Bond Stabilities of Protonated 2′-Fluoro-Substituted Purine Nucleosides. Z. J. Devereaux, C. C. He, Y. Zhu, H. A. Roy, N. A. Cunningham, L. A. Hamlow, G. Berden, J. Oomens and M. T. Rodgers: (2019) J. Am. Soc. Mass. Spec., 30, 1521-1536.  [PDF]

Impact of Sodium Cationization on Gas-Phase Conformations of DNA and RNA Cytidine Mononucleotides. L. A. Hamlow, Y. w Nei, R. R. Wu, J. Gao, J. D. Steill, G. Berden, J. Oomens and M. T. Rodgers: (2019) J. Am. Soc. Mass. Spec., 30, 1758-1767.  [PDF]

Effect of gold plasmonic shell on nonlinear optical characteristics and structure of iron based nanoparticles. Ahmadi Najme, Poursalehi Reza, Kirilyuk Andrei and Moravvej-Farshi Mohammad Kazem: (2019) Applied Surface Science, 479, 114-118.  [PDF]

Spintronic terahertz-frequency nonlinear emitter based on the canted antiferromagnet-platinum bilayers. P Stremoukhov, A Safin, M Logunov, S Nikitov and A. Kirilyuk: (2019) J. Appl. Phys., 125, 223903.  [PDF]

High-field anomalies of equilibrium and ultrafast magnetism in rare-earth–transition-metal ferrimagnets. A. Pogrebna, K.  H Prabhakara, M.  D Davydova, J Becker, A. Tsukamoto, Th Rasing, A. Kirilyuk, A.  K Zvezdin, P. C. M. Christianen and A.  V Kimel: (2019) Phys. Rev. B. 174427. [PDF]

Ionic Pd/NHC Catalytic System Enables Recoverable Homogeneous Catalysis: Mechanistic Study and Application in the Mizoroki–Heck Reaction. Dmitry B. Eremin, Ekaterian A. Denisova, Alexander Yu. Kostyukovich, Martens Jonathan, Berden Giel, Oomens Jos, Victor N. Krustalev, Victor M. Chernyshev and Valentine P. Ananikov: (2019) Chem. Eur. J., 25, 16564-16572. [PDF]

Infrared photodissociation spectroscopy of di-manganese oxide cluster cations. Zimmerman Nina, Bernhardt T. M., Bakker J.M., Landman U. & Lang S. M. (2019). Phys Chem Chem Phys, 43, 23922-23930. [PDF]

Tuning the Dissociative Action of Cationic Rh Clusters Toward NO by Substituting a Single Ta Atom. Yamaguchi Masato, Kudoh S., Miyajima K., Lushchikova O. V., Bakker J.M. & Mafuné F. (2019). J. Phys. Chem., 123, 3476-3481. [PDF]

Sequential activation of methane by Ir+: An IRMPD and theoretical investigation. Wheeler O. W., Salem M., Gao A., Bakker J.M. & Armentrout P. B. (2019). Int. jour. of Mass Spec, 435, 78-92.[PDF]

Methanol C–O Bond Activation by Free Gold Clusters Probed via Infrared Photodissociation Spectroscopy. Lang S. M., Bernhardt T. M., Bakker J., Yoon B. & Landman U. (2019). Z. Chem. Phys, 233, 865-880.[PDF]

Co-adsorption of O2 and C2H4 on a Free Gold Dimer Probed via Infrared Photodissociation Spectroscopy. Lang S. M., Bernhardt T. M., Bakker J., Yoon Bokwon & Landman U. (2019). J. Am. Soc. Mass. Spec., 30, 1895-1905.[PDF]

Zinc and Cadmium Complexation of L‑Threonine: An Infrared Multiple Photon Dissociation Spectroscopy and Theoretical Study. Boles G. C., Hightower R. L., Berden G., Oomens A. G. & Armentrout P. B. (2019). J. Phys. Chem. B, 123, 9343-9354. [PDF]

Gas-Phase Vibrational Spectroscopy of the Hydrocarbon Cations l‑C3H+, HC3H+, and c‑C3H2+: Structures, Isomers, and the Influence of Ne-Tagging. Brünken S., Lipparini F., Stoffels A., Jusko P., Redlich B., Gauss Jürgen & schlemmer S. (2019). J. Phys. Chem. A., 123, 8053-8062.[PDF]

Infrared Spectroscopy of Gold Carbene Cation (AuCH2+): Covalent or Dative Bonding? Armentrout P. B., Stevenson B.C., Yang Fan, F.J. Wensink, Lushchikova O. V. & Bakker J. (2019). J. Chem. Phys. A., 123, 8932-8941.h [PDF]

The Gas-Phase Infrared Spectra of Xylyl Radicals. Hirsch F., Flock M., Fisher I., Bakels Sjors & Rijs Anouk M. (2019). J. Phys Chem A, 123, 9573-9578. [PDF]

Plasmonic layer-selective all-optical switching of magnetization with nanometer resolution. Ignatyeva D.O., Davies C.  S, Saylgacheva D.A., Tsukamoto A., Yoshikawa H., Kapralov P.O., Kirilyuk A., Belotelov V.I. & Kimel A.  V (2019). Nature Communications, 10,4786. [PDF]

Fundamental Limits on the Repetition Rate of Photomagnetic Recording. Szerenos K., Kimel A.  V, Maziewski A., Kirilyuk A. & Stupakiewicz A. (2019). Physical Review Applied, 12, 1-7. [PDF]

Magnetization dynamics of the compensated ferrimagnet Mn2RuxGa. Bonfiglio G., Rode K., Siewerska K. , Besbas J., Atcheson G.Y.P., Stamenov P., J.M.D. Coey, Kimel A.  V, Rasing Th & Kirilyuk A. (2019). Physical Review B., 100, 1-6.[PDF]

Protoisomerization of Indigo and Isoindigo Dyes Confirmed by Gas-Phase Infrared Ion Spectroscopy. Munshi M. U., Martens Jonathan, Berden G. & Oomens J. (2019). J Phys Chem A, 123, 8266-8233. [PDF]

Measurement of the asymmetric UO22+ stretching frequency for [UVIO2(F)3]- using IRMPD spectroscopy. Tatosian Irena, Metzler Luke, Graca Connor, Bubas Amanda, Corcovilos T. A., Martens Jonathan, Berden G., Oomens J. & Stipdonk van Michael J. (2019). International Journal of Mass Spectrometry, 446, 116231.[PDF]

Investigation of the position of the radical in z3-ions resulting from electron transferdissociation using infrared ion spectroscopy. Kempkes L. J. M., Martens Jonathan, Berden G., Houthuijs Kas J. & Oomens J. (2019). Faraday Discuss., 217, 443-452. [PDF]

Gas-phase vibrations of the anionic, hydrogen-bonded dimer of 9-methylguanine. Switzer Christopher, Martens Jonathan, Kempkes Lisanne. J. M., Berden G., Oomens J. & Morton T. H. (2019). int. J. Mass Spectrom., 446, 16211.

Acid solvation versus dissociation at “stardust conditions”: Reaction sequence matters. Mani Devendra, Pérez Ricardo de Tudela, Schwan Raffael, Pal Nitish, Körning Saskia, Forbert Harald, Redlich B., Meer A. F. G. v d, Schwaab Gerhard, Marx Dominik & Havenith Martina (2019). Sci. Adv., 5, 1-7. [PDF]

Observation of the Low-Frequency Spectrum of the Water Dimer as a Sensitive Test of the Water Dimer Potential and Dipole Moment Surfaces. Schwan Raffael, Qu Chen, Mani Devendra, Pal Nitish, Meer A. F. G. v d, Redlich B., Leforestier Claude, Bowman Joel M., Schwaab Gerhard & Havenith Martina (2019). Angewandte Chemie, 58, 13119 – 13126. [PDF]

Infrared Signatures of the HHen+ and DHen+ (n = 3−6) Complexes. Asvany O., Schlemmer S., Szidarovszky T & Császár A.G. (2019). j. phys. Chem., 10, 5325-5330.

Conformational assignment of gas phase peptides and their H-bonded complexes using far-IR/THz: IR-UV ion dip experiment, DFT-MD spectroscopy, and graph theory for mode assignment. Daria Ruth Galimberti, Sana Bougueroua, Jerome Mahe, Matteo Tommasini, Anouk M. Rijs & Gaigeot Marie-Pierre (2019). Faraday Discuss., 217, 67. [PDF]

Formation of Neutral Peptide Aggregates as Studied by Mass-Selective IR Action Spectroscopy. Sjors Bakels, Sebastiaan B.A. Porskamp & Anouk M. Rijs (2019). Angewandte Chemie, 58, 10537-10541. [PDF]

Interactions of aggregating peptides probed by IR-UV action spectroscopy. Sjors Bakels, Eline M. Meijer, Mart Greuell, Sebastiaan B.A. Porskamp, George Rouwhorst, Jerome Mahe, Gaigeot Marie-Pierre & Anouk M. Rijs (2019). Faraday Discuss., 217, 322-341. [PDF]

Spin preservation during THz orbital: pumping of shallow donors in silicon. Saeedi K., Stavrias N., Redlich B., Meer A. F. G. v d, Mikhaylovskiy R, Kimel A.  V, Pidgeon C. R. & Murdin B. N. (2019). j. phys. Condensed Matter, 31, 435401.[PDF]

Spectroscopic Evidence for Lactam Formation in Terminal Ornithine
b2+ and b3+ Fragment Ions.
Zachary M. Schmith, Xiye Wand, Jonathan R. Scheerer, Jonathan Martens, Giel Berden, Jos Oomens, Vincent Steinmetz, Arpod Somogyi, Vicki Wysocki & John C. Poutsma (2019). J. AM. Mass Spectrom., 30, 1565-1577. [PDF]

The FELion cryogenic ion trap beam line at the FELIX free-electron laser laboratory: infrared signatures of primary alcohol cations. Pavel Jusko, Sandra Brünken, Oskar Asvany, Sven Thorwith, Alexander Stoffels, Lex van der Meer, Giel Berden, Britta Redlich, Jos Oomens & Stephan Schlemmer (2019). Faraday Discuss., 217, 172-202. [PDF]

Hydrogen tunneling avoided: enol-formation from a charge-tagged phenyl pyruvic acid derivative evidenced by tandem-MS, IR ion spectroscopy and theory. Mathias Paul, Katrin Peckelsen, Thomas Thomulka, Jörg Neudörfl, Jonathan Martens, Giel Berden, Jos Oomens, Albrecht Berkessel, Anthony J.H.M., Meijer & Mathias Schäfer (2019). Phys Chem Chem Phys, 21, 16591- 6600. [PDF]

Characterization of protonated AcAlaDab and AcDabAla by IRMPD spectroscopy and molecular modeling. Patrick Batoon, Yuntao Zhang, Giel Berden, Jos Oomens & Jianhua Ren (2019). int. jour. of Mass Spec, 444, 116178.[PDF]

Reference-standard free metabolite identification using infrared ion spectroscopy. Rianne E. van Outersterp, Kas J. Houthuijs, Giel Berden, Udo F. Engelke, Leo A.J. Kluijtmans, Ron A. Wevers, Karlien L.M. Koene, Jos Oomens & Jonathan Martens (2019). int. J. Mass Spectrom., 443, 77-85. [PDF]

Infrared Ion Spectroscopy of Environmental Organic Mixtures:
Probing the Composition of α‑Pinene Secondary Organic Aerosol. Emma Q. Walhout, Shelby E. Dorn, Jonathan Martens, Giel Berden, Jos Oomens, Paul H.-Y Cheong, Jesse H. Kroll & Rachel E. O'Brien (2019). Environ Sci Policy, 53, 7604-7612 [PDF]

The importance of thermal dissociation in COmicrowave discharges investigated bypower pulsing and rotational Raman scattering. Bekerom D.C.M. van den, Linnares J.M. Palomares, Verreycken T., Velhuizen E.M. van, Nijdam S., Berden G., Bongers W.A., Sanden M.C.M. van der & Rooij G.J. van (2019). Plasma Sources Science and Technology, 28 [PDF]

Ion spectroscopy and guided ion beam studies of protonated asparaginyl-threonine decomposition: Influence of a hydroxyl containing C-Terminal residue on deamidation processes. Georgia C. Boles, Lisanne J.M. Kempkes, Jonathan Martens, Giel Berden, Jos Oomens & P.B. Armentrout (2019). International Journal of Mass Spectrometry, 442, 64-82.[PDF]

An automatic variable laser attenuator for IRMPD spectroscopy and analysis of power-dependence in fragmentation spectra. Giel Berden, Mathijs Derksen, Kas J. Houthuijs, Jonathan Martens & Jos Oomens (2019). International Journal of Mass Spectrometry, 443, 1-8.  [PDF]

Metallacyclopropene structures identified by IRMPD spectroscopic investigation of the dehydrogenation reactions of Ta+ and TaO+ with ethene. Wheeler O.W., Coates R.A., Lapoutre V.J.F., Bakker J.M. & Armentrout P.B. (2019). International Journal of Mass Spectrometry, 442, 83-94. [PDF]

Gas-Phase Infrared Ion Spectroscopy Characterization of Cu(II/I)Cyclam and Cu(II/I)2,2′-Bipyridine Redox Pairs. Mushleh Uddin Munshi, Jonathan Martens, Giel Berden & Jos Oomens (2019). Phys Chem Chem Phys, 123, 4149-4157.[PDF]

Structures of [GPGG + H - H2O]+ and [GPGG + H - H2O -NH=CH2]+ ions; evidence of rearrangement prior to dissociation. Justin Kai-Chi Lau, Cheuk-Kuen Lai, K.H. Brian Lam, Chu Ivan K., Jonathan Martens, Giel Berden, Jos Oomens, Hopkinson Alan C. & Siu K.W. Michael (2019). International Journal of Mass Spectrometry, 442, 51-57. [PDF]

Taming the Complexity of Donor−Acceptor Stenhouse Adducts: Infrared Motion Pictures of the Complete Switching Pathway. Habiburrahman Zulfikri, Koenis Mark A.J., Lerch Michael M., Donato Mariangela Di, Szymanski Wiktor, Filippi Claudia, Feringa Ben L. & Wybren Jan Buma (2019). JACS, 141, 7376-7384.[PDF]

Effect of molecular structure on the infrared signatures of astronomically relevant PAHs.
Bouwman J., Castellanos P., Bulak M, Terwisscha van Scheltinga J., Cami J., Linnartz H. & Tielens A. G. G. M. (2019). A&A, A80, 8. [PDF]

The Sequence of Coronene Hydrogenation Revealed by Gas-phase IR Spectroscopy. Cazaux Stephanie, Arribard Yann, Egorov Dmittri, Palotás Julianna, Hoekstra Ronnie, Berden Giel, Oomens Jos & Schlathölter Thomas (2019). The Astrophysical Journal, 875. [PDF]

IRMPD action spectroscopy, ER-CID experiments, and theoretical approaches investigate intrinsic L-thymidine properties compared to D-thymidine: Findings support robust methodology.
Soley Erik O., Devereaux Z. J., Hamlow L. A., Berden G. & Oomens J.
Rodgers, M.T. (2019). International Journal of Mass Spectrometry
441, 32-43. [PDF]

Impact of the 2′- and 3′-Sugar Hydroxyl Moieties on Gas-Phase Nucleoside Structure. Hamlow L. A., Devereaux Z. J., Roy H. A., Cunningham N. A., Berden G., Oomens J. & Rodgers M. T. (2019). J. Am. Soc. Mass. Spec., 30, 832-845. [PDF]

Spin-current-mediated rapid magnon localisation and coalescence after ultrafast optical pumping of ferrimagnetic alloys.
Iacocca E, T.-M. Liu, Reid A.H., Fu Z, Ruta S, Granitzla P.W., Jal E., Bonetti S., Gray A.X., Graves C.E.
Kukreja, R., Chen Z., Higley D.J., Chase T., Le Guyader L. , Hirsch K., Ohldag H., Schlotter W.F., Dakovski G.L., Hoffmann M.C., Carron S., Tsukamoto A., Kirilyuk A., Kimel A.  V, Rasing Th, Stöhr J., Evans R.F.L., Ostler T, Chantrell R.W., Hoefer M.A., Silva T.J. & H.A. Dürr (2019). Nat Commun, 10, 1756. [PDF]

Structures of Cun+ (n = 3−10) Clusters Obtained by Infrared Action Spectroscopy. Lushchikova O. V., Huitema D. M. M., Lopez -Tarifa Pablo, Visscher L., Jamshidi Z. & Bakker Joost M. (2019). Phys Chem Letters, 10, 2151-2155.[PDF]

A Cl− Hinge for Cyclen Macrocycles: Ionic Interactions and Tweezer–Like Complexes. Juan Ramón Avilés–Moreno, Giel Berden, Jos Oomens & Bruno Martinez-Haya (2019). Front.Chem, 7, 00143 [PDF]

Selection rules for all-optical magnetic recording in iron garnet. Stupakiewicz A., Szerenos K., Davydova M. D., Zvezdin K. A., Zvezdin A. K., Kirilyuk A. & Kimel A. V. (2019).  Nature Communications, 10, 612. [PDF]

Hydrogen atom transfer in the radical cations of tryptophan-containing peptides AW and WA studied by mass spectrometry, infrared multiple-photon dissociation spectroscopy, and theoretical calculations. Piatkivskyi Andrii, Lau Justin Kai-Chi, Berden Giel, Oomens Jos, Hopkinson Alan C, Siu KW Michael & Ryzhov Victor (2019). European Journal of Mass Spectrometry, 25, 112-121. [PDF]

Experimental and theoretical investigations of infrared multiple photon dissociation spectra of lysine complexes with Zn2+ and Cd2+. . Owen Cameron J, Boles Georgia C, Berden Giel, Oomens Jos & Armentrout PB (2019). European Journal of Mass Spectrometry, 25, 97-111. [PDF]

Gas-phase metal ion chelation investigated with IRMPD spectroscopy: A brief review of Robert Dunbar’s contributions. Oomens Jos, Polfer Nicolas C, Berden Giel & Eyler John R (2019). European Journal of Mass Spectrometry, 25, 86-96.[PDF]

Isotope labeling and infrared multiple-photon photodissociation investigation of product ions generated by dissociation of [ZnNO3(CH3OH)2]+: : Conversion of methanol to formaldehyde. Perez Evan, Corcovilos Theodore A, Gibson John K, Martens Jonathan, Berden Giel, Oomens Jos & Van Stipdonk Michael J (2019). European Journal of Mass Spectrometry, 25, 58-72.[PDF]

Structural changes upon electronic excitation in 1,2-dimethoxybenzene from rotationally resolved electronic spectroscopy of various isotopologues. Hebestreit Marie-Luise, Henrichs Christian, Schneider Michael, Wilke Martin, Meerts W. Leo, Krügler Daniel & Schmitt Michael (2019). Journal of Molecular Structure, 1184, 139-145.[PDF]

Far-IR and UV spectral signatures of controlled complexation and microhydration of the polycyclic aromatic hydrocarbon acenaphthene. Lemmens A. K., Gruet S., Steber A. L., Antony J., Grimme S., Schnell M. & Rijs A. M. (2019). Phys Chem Chem Phys, 21, 3414-3422. [PDF]

Dynamics of infrared excitations in boron doped diamond. Pavlov S. G., Tarelkin S. A., Bormashov V. S., Stavrias N., Saeedi K., van der Meer A. F. G., Bekin N. A., Zhukavin R. Kh, Shastin V. N., Kuznetsov M. S., Terentiev S. A., Nosukhin S. A., Prikhodko D. D., Blank V. D., Wienold M. & Hübers H. W. (2019). Diamond and Related Materials, 92, 259-265. [PDF]

Gas-phase structures of protonated arabino nucleosides. Hamlow L. A., He C. C., Devereaux Zachary J., Roy H. A., Cunningham N. A., Soley Erik O., Berden G., Oomens J. & Rodgers M. T. (2019). International Journal of Mass Spectrometry, 438, 124-134.[PDF]

Anomalously Damped Heat-Assisted Route for Precessional Magnetization Reversal in an Iron Garnet.
Davies C.  S, Prabhakara K.  H, Davydova M.  D, Zvezdin K.  A, Shapaeva T.  B, Wang S., Zvezdin A.  K, Kirilyuk A., Rasing Th & Kimel A.  V (2019). Physical Review Letters, 122, 027202.[PDF]

Magnetic properties of oxygen doped samarium clusters. Albert Diaz-Bachs, Lars Peters & Andrei Kirilyuk (2019). Journal of Physics: Condensed Matter, 31, 074002. [PDF]

Influence of 2′-fluoro modification on glycosidic bond stabilities and gas-phase ion structures of protonated pyrimidine nucleosides. Devereaux Zachary J., Roy H. A., He C. C., Zhu Y., Cunningham N. A., Hamlow L. A., Berden G., Oomens J. & Rodgers M. T. (2019). Journal of Fluorine Chemistry, 219, 10-22.[PDF]

Selective CH bond activation of ethane by free gold clusters. Lang Sandra M., Bernhardt Thorsten M., Bakker Joost M., Yoon Bokwon & Landman Uzi (2019). International Journal of Mass Spectrometry, 435, 241-250.[PDF]

Direct excitation of the spin-orbit forbidden X2π3/2 ← X2π1/2 transition in NO using the intra-cavity free electron laser FELICE. Theo Cremers, Simon Chefdeville, Joost M. Bakker, W. Leo Meerts and Sebastiaan Y. T. van de Meerakker: (2019) Molecular Physics, 117, 2941-2946. [PDF]

Insights into the Recognition of Phosphate Groups by Peptidic Arginine from Action Spectroscopy and Quantum Chemical Computations. J. R. Aviles-Moreno, G. Berden, J. Oomens and B. Martinez-Haya: (2019) J. Phys. Chem. B, 123, 7528-7535. [PDF]

Thesis 2019

Reaction Mechanisms of Collision and Electron Induced Peptide Dissociation Revealed by Ion Spectroscopy. Kempkes Lisanne J.M., 19 March 2019, The Netherlands Nijmegen, Prof. dr. J. Oomens and co-supervisor: Dr. J. Martens.[PDF]

Infrared spectroscopic characterization of functional molecular ions isolated in the gas phase. Munshi Mushleh Uddin, 15 October 2019, The Netherlands Nijmegen, prof. dr. J. Oomens and co-supervisor: Dr. G. Berden. [PDF]