2011

  1. Luesken FA, Sánchez J, van Alen TA, Sanabria J, Op den Camp HJM, Jetten MSM, Kartal B (2011) Simultaneous nitrite-dependent anaerobic methane and ammonium oxidation processes. Appl Environ Microbiol 77:6802-6807
  2. van Kessel MA, Dutilh BE, Neveling K, Kwint MP, Veltman JA, Flik G, Jetten MSM, Klaren PH, Op den Camp HJM (2011) Pyrosequencing of 16S rRNA gene amplicons to study the microbiota in the gastrointestinal tract of carp (Cyprinus carpio L.). AMB Express 18: 1-141.
  3. Zhu B, Sánchez J, TA van Alen, J Sanabria, Jetten MSM, KF Ettwig, B Kartal (2011) Combined anaerobic ammonium and methane oxidation for nitrogen and methane removal. Biochem Soc T 39(6): 1822-5.
  4. van Kessel M, HR Harhangi, G Flik, MSM Jetten, PH Klaren, HJM Op den Camp (2011) Anammox bacteria in different compartments of recirculating aquaculture systems Biochem Soc T 39(6): 1817-21.
  5. Zhu G, Jetten M, Yin C, Feng X, Wang S, Fan G (2011) Anammox bacterial abundance, biodiversity and activity in a constructed wetland. Environ Sci Technol 45(23): 9951-8.
  6. Kip N, Fritz C, Langelaan ES, Pan Y, Bodrossy L, Pancotto V , Jetten MSM, Smolders AJP, Op Den Camp HJM (2011) Methanotrophic activity and diversity in different Sphagnum magellanicum dominated habitats in the southernmost peat bogs of Patagonia. Biogeosciences Discussions 8: 9357-9380.
  7. Smeulders MJ, Barends TRM, Pol A, Scherer A, Zandvoort MH, Udvarhelyi A, Khadem AF, Menzel A, Hermans J, Shoeman RL, Wessels HJCT, van den Heuvel LP, Russ L, Schlichting I, Jetten MSM, Op den Camp HJM (2011) Evolution of a new enzyme for carbon disulphide conversion by an acidothermophilic archaeon. Nature 478(7369): 412-6.
  8. Neumann S, Jetten MSM, van Niftrik L (2011) The ultrastructure of the compartmentalized anaerobic ammonium oxidizing bacteria is linked to their energy metabolism. Biochem Soc T 39(6): 1805-10.
  9. Boden R, Cunliffe M, Scanlan J, Moussard H, Kitz K, Klotz M, Jetten M, Vuilleumier S, Han J, Peters L, Mikhailova N, Teshima H, Tapia R, Kyrpides N, Ivanova N, Pagani I, Cheng J-F, Goodwin L, Han C, Hauser L, Land M, Lapidus A, Lucas S, Pitluck S, Woyke T, Stein L, Murrell C (2011) Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09. J Bacteriol 193(24): 7001-2.
  10. Kartal B, Maalcke WJ, de Almeida NM, Cirpus I, Gloerich J, Geerts W, Op den Camp HJM, Harhangi HR, Janssen-Megens EM, Francoijs K-J, Stunnenberg HG, Keltjens JT, Jetten MSM, Strous M (2011) Molecular mechanism of anaerobic ammonium oxidation. Nature 479(7371): 127-30.
  11. Kip N, Ouyang W, van Winden J, Raghoebarsing A, van Niftrik L, Pol A, Pan Y, Bodrossy L, van Donselaar EG, Reichart GJ, Jetten MS, Sinninghe Damsté JS, Op den Camp HJ (2011) Detection, isolation and characterization of acidophilic methanotrophs from Sphagnum mosses. Appl Environ Microbiol 77 (16): 5643-5654.
  12. Khadem AF, Pol A, Wieczorek A, Mohammadi SS, Francoijs KJ, Stunnenberg HG, Jetten MS, Op den Camp HJ (2011) Autotrophic methanotrophy in Verrucomicrobia: Methylacidiphilum fumariolicum SolV uses the Calvin Benson Bassham cycle for carbon dioxide fixation. J Bacteriol 193 (17): 4438-4446.
  13. Zhu G, Wang S, Wang Y, Wang C, Risgaard-Petersen N, Jetten MS, Yin C (2011) Anaerobic ammonia oxidation in a fertilized paddy soil. ISME J 5(12): 1905-12.
  14. Dutilh BE, Jurgelenaite R, Szklarczyk R, van Hijum SA, Harhangi HR, Schmid M, de Wild B, Francoijs K-J, Stunneberg HG, Strous M, Jetten MSM, Op den Camp HJM, Huynen MA (2011) FACIL: fast and accurate genetic code inference and logo. Bioinformatics 15; 27 (14): 1929-1933.
  15. Luesken FA, van Alen TA, van der Biezen E, Frijters C, Toonen G, Kampman C, Hendrickx TLG, Zeeman G, Temmink H, Strous M, Op den Camp HJM, Jetten MSM (2011) Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge. Appl Microbiol Biotechnol 92(4):845-54.
  16. Jensen MM, Lam P, Revsbech NP, Nagel B, Gaye B, Jetten MSM, Kuypers MM (2011) Intensive nitrogen loss over the Omani Shelf due to anammox coupled with dissimilatory nitrite reduction to ammonium. ISME J 5:1660-1670 (doi: 10.1038/ismej.2011.44).
  17. Van den Heuvel RN, Bakker SE, Jetten MSM, Hefting MM (2011) Decreased N(2)O reduction by low soil pH causes high N(2)O emissions in a riparian ecosystem. Geobiology 9: 294-300.
  18. Angeloni F, Wagemaker CAM, Jetten MSM, Op den Camp HJM, Janssen-Megens EM, Francoijs K-J, Stunnenberg HG, Ouborg NJ (2011) De novo transcriptome characterization and development of genomic tools for Scabiosa columbaria L. using next-generation sequencing techniques.Ecology Resources 11 (4): 662-674.
  19. Parmentier FJW, Van Huissteden J, Kip N, Op den Camp HJM, Jetten MSM, Maximov TC, Dolman AJ (2011) The role of endophytic methane oxidizing bacteria in submerged Sphagnum in determining methane emissions of Northeastern Siberian tundra. Biogeosciences 8: 1267-1278 (doi:10.5194/bg-8-1267-2011).
  20. Stein LY, Bringel F, Dispirito AA, Han S, Jetten MS, Kalyuzhnaya MG, Kits KD, Klotz MG, Op den Camp HJ, Semrau JD, Vuilleumier S, Bruce DC, Cheng JF, Davenport KW, Goodwin L, Han S, Hauser L, Lajus A, Land ML, Lapidus A, Lucas S, Médigue C, Pitluck S, Woyke T (2011) Genome sequence of the methanotrophic Alphaproteobacterium, Methylocystis sp. Rockwell (ATCC 49242). J Bacteriol 193: 2668-2669.
  21. Kip, N., Dutilh, B.E., Pan, Yao, Bodrossy, L., Neveling, K., Kwint, M.P., Jetten, M.S.M. & Op den Camp, H.J.M. (2011). Ultra-deep pyrosequencing of pmoA amplicons confirms the prevalence of Methylomonas and Methylocystis in Sphagnum mosses from a Dutch peat bog. Environ. Microbiol. Reports 3: 667-673 (DOI: 10.1111/j.1758-2229.2011.00260.x)
  22. Luesken FA, Zhu B, van Alen T, Butler MK, Rodriguez Diaz M, Song B, Op den Camp HJM, Jetten MSM, Ettwig KF (2011) pmoA primers for detection of anaerobic methanotrophs. Appl Environ Microbiol 77: 3877-3880.
  23. de Graaf RM, Ricard G, van Alen TA, Duarte I, Dutilh BE, Burgtorf C, Kuiper JWP, van der Staay GWM, Tielens AGM, Huynen MA, Hackstein JHP (2011) The organellar genome and metabolic potential of the hydrogen producing mitochondrion of Nyctotherus ovalis. Mol Biol Evol 28: 2379-2391 (doi: 10.1093/molbev/msr059).
  24. Sixt BS,Heinz C, Pichler P, Heinz E, Montanaro J, Op den Camp HJM, Ammerer G, Mechtler K, Wagner M, Horn M (2011) Proteomic analysis reveals a virtually complete set of proteins for translation and energy generation in elementary bodies of the amoeba symbiont Protochlamydia amoebophila. Proteomics 11: 1868-1892 (doi: 10.1002/pmic.201000510).
  25. Fritz C, Pancotto VA, Elzenga JTM, Visser EJW, Grootjans AP, Pol A, Iturraspe R, Roelofs JGM, Smolders AJP (2011) Zero methane emission bogs: extreme rhizosphere oxygenation by cushion plants in Patagonia. New Phytologist 190: 398-408 (doi: 10.1111/j.1469-8137.2010.03604.x).
  26. Brandsma J, van de Vossenberg J, Risgaard-Petersen N, Schmid MC, Engström P, Eurenius K, Hulth S, Jaeschke A, Abbas B, Hopmans EC, Strous M, Schouten S, Jetten MSM, Sinninghe Damsté JS (2011) Spatial distribution of anaerobic ammonium oxidation in marine sediments: a multi-proxy study of the Gullmar Fjord, Sweden. EMI reports 3: 360-366.
  27. Wu ML, de Vries S, van Alen TA, Butler MK, Op den Camp HJ, Keltjens JT, Jetten MSM, Strous M (2011) Physiological role of the ubiquinol respiratory oxygen oxidase in the anaerobic nitrite-reducing methanotroph 'Candidatus Methylomirabilis oxyfera'. Microbiology 157: 890-898.
  28. Hu B, Rush D, van der Biezen E, van Mullekom M, Schouten S, Damste J, Smolders A, Jetten M, Kartal B (2011) A new anaerobic ammonium-oxidizing community enriched from peat soil. Appl Environ Microbiol 77: 966-971.
  29. Gori F, Falino G, Jetten MSM, Machori E (2011) Taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks. Bioinformatics 27: 196-203.
  30. Wu ML, Ettwig K, Jetten M, Strous M, Keltjens J, van Niftrik L (2011) A new intra aerobic pathway for methane oxidation in Methylomirabilis oxyfera. Biochem Soc Trans 39: 243-248.
  31. Almeida N, Maalcke W, Keltjens J, Jetten M, Kartal B (2011) Protein and protein complex in anammox. Biochem Soc Trans 39: 303-308.
  32. Tavormina PL, Orphan VJ, Kalyuzhnaya MG, Jetten MSM, Klotz MG (2011) A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs. Environ Microbiol Reports 3: 91-100.
  33. Borges A, Op den Camp HJM, De Sanctis JB (2011) Specific activation of human neutrophils by scorpion venom: a flow cytometry assessment.Toxicology in Vitro 25: 358-367.
  34. Gori F, Green Tringe S, Kartal B, Marchiori E, Jetten MSM (2011) The metagenomic basis of anammox metabolism in Brocadia fulgida. Biochem Soc T 39: 1799-1804.