2015

  1. Almeida NM de, Neumann S, Mesman RJ, Ferousi C, Keltjens JT, Jetten MS, Kartal B, Niftrik L van (2015)
    Immunogold localization of key metabolic enzymes in the anammoxosome and on the tubule-like structures of Kuenenia stuttgartiensis
    J Bacteriol. 2015 May 11. pii: JB.00186-15. (Epub ahead of print)
  2. Anvar, S.Y., Frank, J., Pol, A., Schmitz, A., Kraaijeveld, K., den Dunnen, J.T. & Op den Camp, H.J.M. (2015)
    The genomic landscape of the verrucomicrobial methanotroph Methylacidiphilum fumariolicum SolV. BMC Genomics Accepted for publication MS ID: 2008565802123090
  3. Arshad A, Speth DR, Graaf RM de, Op den Camp HJM, Jetten MSM, Welte C (2015)
    A metagenomics-based metabolic model of nitrate-dependent anaerobic oxidation of methane by Methanoperedens-like archaea
    Front. Microbiol. 6:1423. doi: 10.3389/fmicb.2015.01423
  4. Beckmann, S., Welte, C.U., Li, X., Oo, Y., Kroeninger, L., Heo, Y., Ribeiro, D., Lee, M., Bhadbhade, M., Marjo, C., Seidel, J., Deppenmeier, U., Manefield, M. (2015)
    Novel phenazine crystals enable direct electron transfer to methanogens in anaerobic digestion by redox potential modulation.
    Energy & Environmental Science, in press
  5. Coban O, Kuschk P, Kappelmeyer U, Spott O,  Martienssen M, Jetten MSM, Knoeller K. (2015)
    Nitrogen transforming community in a horizontal subsurface-flow constructed wetland.
    Water Research, 74, 203-212. doi: 10.1016/j.watres.2015.02.018
  6. Dietl A, Ferousi C, Maalcke WJ, Menzel A, Vries S de, Keltjens JT, Jetten MSM, Kartal B, Barends TRM (2015)
    The inner workings of the hydrazine synthase multiprotein complex
    Nature, doi:10.1038/nature15517
  7. Dietl A, Maalcke W, Barends TR. (2015)
    An unexpected reactivity of the P460 cofactor in hydroxylamine oxidoreductase.
    Acta Crystallogr D Biol Crystallogr. 2015 Aug;71(Pt 8):1708-13. doi: 10.1107/S1399004715010706. Epub 2015 Jul 31.
  8. Egger M, Rasigraf O, Sapart CJ, Jilbert T, Jetten MS, Röckmann T, van der Veen C, Banda N, Kartal B, Ettwig KF, Slomp CP (2015)
    Iron-mediated anaerobic oxidation of methane in brackish coastal sediments.
    Environmental Science & Technology, 49 (1), 277-283. doi: 10.1021/es503663z
  9. Faddeeva, A., Studer, R.A., Kraaijeveld, K., Sie, D., Ylstra, B., Marien, J., Camp, H.J.M. op den, Datema, E., Dunnen, J.T. den, Straalen, N.M. van & Roelofs, D. (2015).
    Collembolan transcriptomes highlight molecular evolution of hexapods and provide clues on the adaptation to terrestrial life.
    PLoS One, 10 (6). doi: 10.1371/journal.pone.0130600
  10. Flynn F, Hirayama H, Sakai Y, Dunfield P,  Klotz M,  Knief C, Op den Camp H, Jetten M, Khmelenina V, Trotsenko Y, Murrell C , Semrau J, Svenning M, Stein L, Kyrpides N, Shapiro N, Woyke T,  Bringel F, Vuilleumier S, DiSpirito A, and Kalyuzhnaya M (2015)
    Draft genomens of gammaproetobacterial methanotrophs isolated from marine ecosystems
    genomeA 01629-15 (accepted)
  11. Gerritsen J, Fuentes S, Grievink W, Niftrik L van, Tindall BJ, Timmerman HM, Rijkers GT, Smidt H (2015).
    Characterization of Romboutsia ilealis gen. nov., sp. nov., isolated from the gastro-intestinal tract of a rat and proposal for the reclassification of five closely related members of the genus Clostridium into the genera Romboutsia gen. nov., Intestinibacter gen.nov., Terrisporobacter gen. nov. and Asaccharospora gen. nov.
    Int Journ of Syst and Evol Microbiol accepted
  12. Graaf, R.M. de, Krosse, S., Swolfs, A.E.M., Brinke, E. te, Prill, N., Leimu, R., Galen, P.M. van, Wang, Y., Aarts, M.G.M. & Dam, N.M. van (2015).
    Isolation and identification of 4-alpha-rhamnosyloxy benzyl glucosinolate in noccaea caerulescens showing intraspecific variation.
    Phytochemistry, 110, 166-171. doi: 10.1016/j.phytochem.2014.11.016
  13. Guo J, Peng Y, Fan L, Zhang L, Ni BJ, Kartal B, Feng X, Jetten MSM, Yuan Z (2015)
    Metagenomic analysis of anammox communities in three different microbial aggregates
    Environ Microbiol DOI: 10.1111/1462-2920.13132
  14. Hamilton R, Kits KD, Ramonovskaya VA, Rozova ON, Yurimoto H, Iguchi H, Khmelenina VN, Sakai Y, Dunfield PF, Klotz MG, Knief C, Op den Camp HJ, Jetten MS, Bringel F, Vuilleumier S, Svenning MM, Shapiro N, Woyke T, Trotsenko YA, Stein LY, Kalyuzhnaya MG. (2015)
    Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems.
    Genome Announc. 2015 Jun 4;3(3). pii: e00515-15. doi: 10.1128/genomeA.00515-15
  15. Harpenslager, S.F., Elzen, E. van den, Kox, M.A.R., Smolders, A.J.P., Ettwig, K.F. & Lamers, L.P.M. (2015). Rewetting former agricultural peatlands: Topsoil removal as a prerequisite to avoid strong nutrient and greenhouse gas emissions.
    Ecological Engineering, 84, 159-168. doi: 10.1016/j.ecoleng.2015.08.002
  16. He Z, Cai C, Wang J, Xu X, Zheng P, Jetten MS, Hu B (2016)
    A novel denitrifying methanotroph of the NC10 phylum and its microcolony
    Sci Rep. 2016 Sep 1;6:32241. doi: 10.1038/srep32241.
  17. Henneberger R, Chiri E, Bodelier PE, Frenzel P, Lüke C, Schroth MH (2015)
    Field-scale tracking of active methane-oxidizing communities in a landfill cover soil reveals spatial and seasonal variability
    Environ Microbiol. 2015 May;17(5):1721-37. doi: 10.1111/1462-2920.12617. Epub 2014 Oct 13
  18. Jong, M de, Wolters-Arts, M., Schimmel, B.C.J., Stultiens, C.L.M. Groot, P.F.M., Powers, S.J., Tikunov, Y.M., Bovy, A.G., Mariani, C., Vriezen, W.H. & Rieu, I. (2015). Solanum lycopersicum auxin response factor 9 regulates cell division activity during early tomato fruit development.
    Journal of Experimental Botany, 66 (11), 3405-3416. doi: 10.1093/jxb/erv152
  19. Kessel AHJ van, Speth DR, Albertsen M, Nielsen PH, Op den Camp HJM, Kartal B, Jetten MSM, Lücker S (2015)
    Complete nitrification by a single microorganism
    Nature, DOI: 10.1038/nature16459
  20. Kletzin A, Heimerl T, Flechsler J, van Niftrik L, Rachel R, Klingl A (2015)
    Cytochromes c in Archaea: distribution, maturation, cell architecture, and the special case of Ignicoccus hospitalis.
    Front Microbiol. 2015 May 12;6:439. doi: 10.3389/fmicb.2015.00439. eCollection 2015
  21. Koch H, Lücker S, Albertsen M, Kitzinger K, Herbold C, Spieck E, Nielsen PH, Wagner M, Daims H (2015)
    Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira
    PNAS www.pnas.org/cgi/doi/10.1073/pnas.1506533112
  22. Kox MAR and Jetten MSM (2015)
    The Nitrogen Cycle.
    In Plant Microbe Interactions, Lugtenberg BJJ (Ed) Springer Verlag Berlin in press
  23. Krause S, Niklaus PA, Morcillo SB, Franke MM, Lüke C, Reim A, Bodelier PL. (2015)
    Compositional and functional stability of aerobic methane consuming communities in drained and rewetted peat meadows.
    FEMS Microbiol Ecol.
    2015 Oct 7. pii: fiv119. [Epub ahead of print]
  24. Kroeninger, L., Berger, S., Welte, C., Deppenmeier, U. (2015)
    Evidence for the involvement of two different heterodisulfide reductases in the energy conserving system of Methanomassiliicoccus luminyensis.
    FEBS J, in press
  25. Lotti T, Kleerebezem R, Hu Z, Kartal B, de Kreuk MK, van Erp Taalman Kip C, Kruit J, Hendrickx TL, van Loosdrecht MC (2015)
    Pilot-scale evaluation of anammox-based mainstream nitrogen removal from municipal wastewater
    Environ Technol. 2015 May;36(9):1167-77. doi: 10.1080/09593330.2014.982722. Epub 2014 Dec 3.
  26. Lücker S, Schwarz J, Gruber-Dorninger C, Spieck E, Wagner M, Daims H. (2016)
    Nitrotoga-like bacteria are previously unrecognized key nitrite oxidizers in full-scale wastewater treatment plants.
    ISME J. 2015 Mar;9(3):708-20. doi: 10.1038/ismej.2014.158.
  27. Reimann J, Jetten MSM, Keltjens JT (2015)
    Metal Enzymes in “Impossible” Microorganisms Catalyzing the Anaerobic Oxidation of Ammonium and Methane
    Sustaining Life on Planet Earth: Metalloenzymes Mastering Dioxygen and Other Chewy Gases: 257-313
  28. Rivera-Vega, L.J., Krosse, S., Graaf, R.M. de, Garvi, J., Garvi, R. & Dam, N.M. van (2015). Allelopathic effects of glucosinolate breakdown products in hanza (boscia senegalensis (pers.) lam.) processing waste water.
    Frontiers in Plant Science, 6, 532. doi: 10.3389/fpls.2015.00532
  29. Robroek, B.J.M., Jassey, V.E.J., Kox, M.A.R., Berendsen, R.L., Mills, R.T.E., Cecillon, L., Puissant, J., Meima-Franke, M., Bakker, P. & Bodelier, P.L.E. (2015).
    Peatland vascular plant functional types affect methane dynamics by altering microbial community structure.
    J Ecol, 103 (4), 925-934. doi: 10.1111/1365-2745.12413
  30. Speth, D.R., Russ, L., Kartal, B., Op den Camp, H.J.M., Dutilh, B.E., Jetten, M.S.M. (2015)
    Draft genome sequence of anammox bacterium ‘Candidatus Scalindua brodae’, obtained using differential coverage binning of sequencing data from two reactor enrichments.
    Genome Announcements Manuscript # genomeA01415-14 Accepted for publication
  31. Speth DR, in t Zandt MH, Guerrero Cruz S, Dutilth BE, Jetten MSM (2016)
    Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system.
    Nature Communications 31 March 2016. DOI: 10.1038/ncomms11172.
  32. Sharp CE, Smirnova AV, Kalyuzhnaya MG, Bringel F, Hirayama H, Jetten MS, Khmelenina VN, Klotz MG, Knief C, Kyrpides N, Op den Camp HJ, Reshetnikov AS, Sakai Y, Shapiro N, Trotsenko YA, Vuilleumier S, Woyke T, Dunfield PF (2015)
    Draft Genome Sequence of the Moderately Halophilic Methanotroph Methylohalobius crimeensis Strain 10Ki.
    Genome Announc. 2015 Jun 11;3(3). pii: e00644-15. doi: 10.1128/genomeA.00644-15.
  33. Teeseling MC van, Mesman RJ, Kuru E, Espaillat A, Cava F, Brun YV, VanNiewenhuize MS, Kartal B, Niftrik L van (2015)
    Anammox Planctomycetes have a peptidoglycan cell wall
    Nat Commun. 2015 May 12;6:6878. doi: 10.1038/ncomms7878.
  34. Vaksmaa A, Lüke C, van Alen T, Vale G, Lupotto E, Jetten M, Ettwig KF (2016)
    Distribution and activity of the anaerobic methanotrophic community in a nitrogen-fertilized Italian paddy soil
    FEMS Microbiol Ecol. 2016 Aug 24. pii: fiw181. [Epub ahead of print]
  35. Wang, Y., Huang, P., Ye, F., Jiang, Y., Song, L., Op den Camp, H.J.M., Zhu, G. & Wu, S. (2015).
    Nitrite-dependent anaerobic methane oxidizing bacteria along the water level fluctuation zone of the Three Gorges Reservoir.
    Appl. Microbiol. Biotechnol. Online first 29-10-2015 (doi:10.1007/s00253-015-7083-2)
  36. Welte, C., Kroeninger, L., Deppenmeier, U. (2015)
    Experimental evidence of an acetate transporter protein and characterization of acetate activation in aceticlastic methanogenesis of Methanosarcina mazei.
    FEMS Microbiol Lett, epub ahead of print
  37. Welte C, Jetten MSM (2015)
    Fortunate those that are starting now
    Environ Microbiol Rep. 2015 Feb;7(1):23-5. doi: 10.1111/1758-2229.12229.
  38. Winkler  MKH, Ettwig KF, Vannecke TPW, Stultiens K, Bogdan A, Kartal B, Volcke EIP (2015)
    Modelling simultaneous anaerobic methane and ammonium removal in a granular sludge reactor.
    Water Research 73, 323-331
  39. Wu M, Wessels H, Pol A, Op den Camp H, Jetten M, Niftrik L van, Keltjens J (2015)
    An XoxF-type methanol dehydrogenase from the anaerobic methanotroph 'Candidatus Methylomirabilis oxyfera
    Appl. Environ. Microbiol. Accepted
  40. Zeijl A van, Op den Camp RH, Deinum EE, Charnikhova T, Franssen H, Op den Camp HJ, Bouwmeester H, Kohlen W, Bisseling T, Geurts R (2015)
    Rhizobium Lipo-chitooligosaccharide Signaling Triggers Accumulation of Cytokinins in Medicago truncatula Roots
    Molecular Plant 8 (8), 1213-1226 2015 Mar 21. pii: S1674-2052(15)00178-1. doi: 10.1016/j.molp.2015.03.010.
  41. Zhu G, Zhou L, Wang Y, Wang S, Guo J, Long X, Sun X, Jiang B, Hou Q, Jetten MSM, Yin C (2015)
    Biogeographical distribution of denitrifying anaerobic methane oxidizing bacteria in Chinese wetland ecosystems.
    Environmental Microbiology Reports AEM.03292-1
  42. Zhu G, Wang S, Zhou L, Wang Y, Zhao S, Xia C, Wang W, Zhou R, Wang C, Jetten MSM, Hefting MH, Yin C, Qu J (2015)
    Ubiquitous anaerobic ammonium oxidation in inland waters of China: an overlooked nitrous oxide mitigation process
    Scientific Reports 5, Article number: 17306 (2015) doi:10.1038/srep17306

2014

  1. Dumont Mg, Lüke C, Deng Y, Frenzel P (2014.
    Classfication of pmoA amplicon pyrosequences using BLAST and the lowest common ancestor method in MEGAN. Front Microbiol 5:34 doi: 10.3389/fmicb.2014.00034
  2. Faddeeva, A., Studer, R.A., Kraaijeveld, K., Sie, D., Ylstra, B., Mariën, J., Op den Camp, H.J.M., Datema, E., den Dunnen, J.T., van Straalen, N.M. & Roelofs, D. (2014).
    Collembolan transcriptomes highlight molecular evolution of hexapods and provide clues on the adaptation to terrestrial life.
    PloS ONE 10(6): e0130600
    (doi:10.1371/journal.pone.0130600)
  3. Haan J de, Visser P, Ganase A, Gooren E, Stal L, Duyl F, Vermeij M, Huisman J (2014)
    Nitrogen fixation rates in algal turf communities of a degraded versus less degraded coral reef.
    Coral Reefs, published online DOI 10.1007/s00338-014-1207-5
  4. Hendrickx TL, Kampman C, Zeeman G, Temmink H, Hu Z, Kartal B, Buisman CJ. (2014)
    High specific activity for anammox bacteria enriched from activated sludge at 10°C. Bioresour Technol. 2014 Jul;163:214-21. doi: 10.1016/j.biortech.2014.04.025. Epub 2014 Apr 18.
  5. Henneberger R, Chiri E, Bodelier PEL, Frenzel P, Lüke C, Schroth MH (2014) Field‐scale tracking of active methane‐oxidizing communities in a landfill cover soil reveals spatial and seasonal variability. Environmental microbiology. DOI: 10.1111/1462-2920.12617
  6. Keltjens, J.T., Pol, A., Reimann, J. & Op den Camp H.J.M. (2014)
    PQQ-dependent methanol dehydrogenases: rare earth elements make a difference. Appl. Microbiol. Biotechnol, vol 96:6163-6183 (DOI 10.1007/s00253-014-5766-8
  7. Koch H, Galushko A, Albertsen M, Schintlmeister A, Gruber-Dorninger C, Lϋcker S, Pelletier E, Le Paslier D, Spieck E, Richter A, Nielsen P, Wagner M, Daims H, (2014)
    Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation. Science, vol 345, 5:28, no 6200: 1052-1054 DOI: 10.1126/science.1256985
  8. Kool DM, Talbot HM, Rush D, Ettwig K, Damste JJS (2014)
    Rare bacteriohopanepolyols as markers for an autotrophic, intra-aerobic methanotroph. Geochimica et Cosmochimica Acta, vol 136, 114-125 DOI: 10.1016/j.gca.2014.04.002
  9. Langone M, Yan J, Haaijer SC, Op den Camp HJ, Jetten M, Andreottola. (2014)
    Coexistence of nitrifying, anammox and denitrifying bacteria in a sequencing batch reactor. Front Microbiol doi: 10.3389/fmicb.2014.00028
  10. Lotti T, Kleerebezem R, Hu Z, Kartal B, Jetten MSM, Loosdrecht MCM van (2014)
    Simultaneous partial nitritation and anammox at low temperature with granular sludge. Water Research pubdate online 2014/8/14
  11. Lotti T, Kleerebezem R, Hu Z, Kartal B, de Kreuk MK, van Erp Taalman Kip C, Kruit J, Hendrickx TL, van Loosdrecht MC (2014)
    High specific activity for anammox bacteria enriched from activated sludge at 10°C. Environ Technol. 2014 Nov 20:1-34. [Epub ahead of print]
  12. Maalcke WJ, Dietl A, Maritt JNB, Jetten MSM, Keltjens JT, Barends TRM, Kartal B. (2014)
    Structural Basis of biological NO generation by octaheme oxidoreductases. Journ of Biol Chem 289 (3), 1228-1242
  13. Moon-van der Staay SY, Staay GWM van der, Michalowski T, Jouany J-P, Pristas P, Javorsky P, Kisidayova S, Varadyova Z, McEwan NR, Newbold CJ, Alen T van, Graaf R de, Schmid M, Huynen, MA, Hackstein JHP. (2014)
    The symbiotic intestinal ciliates and the evolution of their hosts. Eur Journal of Protistology 50: 166-173
  14. Neuman S, Wessels HJ, Rijpstra WI, Sinninghe Damsté JS, Kartal B, Jetten MS, van Niftrik L (2014)
    Isolation and characterization of a prokaryotic cell organelle from the anammox bacterium Kuenenia stuttgartiensis. Mol Microbiol. 2014 Oct 7. doi: 10.1111/mmi.12816. [Epub ahead of print]
  15. Oshkin IY, Wegner C-E, Lüke C, Glagolev MV, Filippov IV, Pimenov NV, Liesack W, Dedysh SN (2014) Gammaproteobacterial Methanotrophs Dominate Cold Methane Seeps in Floodplains of West Siberian Rivers. Applied and environmental microbiology 80 (19), 5944-5954
  16. Pester, M., F. Maixner, D. Berry, T. Rattei, H. Koch, S. Lücker, B. Nowka, A. Richter, E. Spieck, E. Lebedeva, A. Loy, M. Wagner, and H. Daims (2014).
    “NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira”. Environmental Microbiology 16(10): 3055-3071
  17. de Poel, W., Pintea, S., de Jong, A., Drnec, J., Carlà, F., Felici, R., Op den Camp, H., Elemans, J., van Enckevort, W., Rowan, A., & Vlieg, E. (2014)
    Dibenzo-crown-ether layer formation on muscovite mica. Langmuir 30, 12570-12577
  18. Pol A, Barends TRM, Dietl A, Khadem AF, Eygenstein J, Jetten MSM, Op den Camp HJM (2014)
    Rare earth metals are essential for methanotrophic life in volcanic mudpots. Environ Microbiol 16 (1), 255-264
  19. Rasigraf O, Kool DM, Jetten MSM, Damste JSS, Ettwig KF (2014)
    Autotrophic carbon dioxide fixation via the calvin-benson-bassham cycle by the denitrifying methanotroph "candidatus methylomirabilis oxyfera". Applied and Environmental Microbiology, 80(8), 2451-2460
  20. Remus-Emsermann M.N.P., S. Lücker, D.B. Müller, E. Potthoff, H. Daims, and J.A. Vorholt (2014). “Spatial distribution analyses of natural phyllosphere-colonizing bacteria on Arabidopsis thaliana revealed by fluorescence in situ hybridization”. Environmental Microbiology 16(7): 2329-2340
  21. Rush D, Sinninghe Damsté JS, Poulton SW, Thamdrup B, Garside AL, González JA, S, Jetten MSM, Talbot HM (2014) Anaerobic ammonium-oxidising bacteria: A biological source of the bacteriohopanetetrol stereoisomer in marine sediments. Geochimica et Cosmochimica Acta, vol 140; 50-64
  22. Russ L, Speth, D.R., Jetten, M.S.M., Op den Camp, H.J.M. & Kartal, B. (2014)
    Interactions between anaerobic ammonium and sulfur-oxidizing bacteria in a laboratory scale model system.Environ. Microbiol. [Epub ahead of print] 18-04-2014 (doi: 10.1111/1462-2920.12487)
  23. Sanchez J, Sanabria J, Jetten MSM (2014)
    Faster autotrophic growth of anaerobic ammonium-oxidizing microorganisms in presence of nitrite, using inocula from Colombia.
    Revista Colombiana de Biotecnologia, 16, 1: 146-152
  24. Sorokin D.Y., D. Vejmelkova, S. Lücker, G.M. Streshinskaya, I. Rijpstra, J. Sinninghe Damsté, R. Kleerebezem, M. van Loosdrecht, G. Muyzer, and H. Daims (2014).
    “Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite-oxidizing bacterium from a bioreactor belonging to the phylum Chloroflexi“. International Journal of Systematic and Evolutionary Microbiology 64 (Pt 6): 1859-1865
  25. van Teeseling MCF, Almeida NM de, KLingl A, Speth DR, Op den Camp HJM, Rachel R, Jetten MSM, Niftrik L van (2014) A New Addition to the Cell Plan of Anammox Bacteria: 'Candidatus Kuenenia stuttgartiensis' has a Protein Surface Layer as the Outermost Layer of the Cell. Journal of Bacteriol 191 (1), 80-89
  26. van Teeseling, M.C.F., Pol, A., Harhangi, H.R. Harhangi, van der Zwart, S. Jetten, M.S.M., Op den Camp, H.J.M. & van Niftrik, L. (2014)
    Isolation and characterization of three novel mesophilic verrucomicrobial methanotrophs from volcanic soil. Appl. Environ. Microbiol. 80: 6782-6791 (doi: 10.1128/AEM.01838-14)
  27. Villanueva L, Speth DR, Alen T van, Hoischen A, Jetten M. (2014)
    Shotgun metagenomic data reveals significant abundance but low diversity of 'Candidatus Scalindua' marine anammox bacteria in the Arabian Sea oxygen minimum zone. Front Microbiol doi: 10.3389/fmicb.2014.00031
  28. Welte C., Deppenmeier, U. (2014)
    Bioenergetics and anaerobic respiratory chains of aceticlastic methanogens. Biochim Biophys Acta 1873: 1130-47