Delen

2021

  1. Atashgahi Siavash, Oosterkamp Margreet J., Peng Peng, Frank Jeroen, Kraft Beate, Hornung Bastian, Schleheck David, Lücker Sebastian, Jetten Mike S. M., Stams Alfons J.M., Smidt Hauke
    Proteogenomic analysis of Georgfuchsia toluolica revealed unexpected concurrent aerobic and anaerobic toluene degradation
    Environmental Microbiology Reports, August 2021
    doi.org/10.1111/1758-2229.12996
  2. Beek L.F. van, Langereis J.D., Berg van den van Saparoea H.B., Gillardab J., Jong W.S.P., Opzeeland F.J. van, Mesman R., Niftrik L. van, Joosten L., Diavatopoulos D.A., Luirink J., Jonge de M.I.
    Intranasal vaccination with protein bodies elicit strong protection against Streptococcus pneumoniae colonization
    Elsevier Vaccine, October 2021
    doi.org/10.1016/j.vaccine.2021.10.006
  3. Bergen Tamara J.H.M. van, Rios-Miguel Ana B., Nolte Tom M., Ragas Ad M.J., Zelm Rosalie van, Graumans Martien, Scheepers Paul T.J., Jetten Mike S.M., Hendriks Jan A. & Welte Cornelia U.
    Do initial concentration and activated sludge seasonality affect pharmaceutical biotransformation rate constants?
    Applied Microbiology and Biotechnology, august 2021
    doi.org/10.1007/s00253-021-11475-9
  4. Berger Stefanie, Cabrera-Orefice Alfredo, Jetten Mike S.M., Brandt Ulrich, Welte Cornelia U.
    Investigation of central energy metabolism-related protein complexes of ANME-2d methanotrophic archaea by complexome profiling
    Biochimica et Biophysica Acta (BBA) – Bioenergetics, Volume 1862, Issue 1, 1 January 2021
    doi.org/10.1016/j.bbabio.2020.148308
  5. Berger D., Rangel Shaw D., Berben T., Ouboter H.T., Zandt M.H. in ‘t, Frank J., Reimann J., Jetten M.S.M, Welte C.U.
    Current production by non-methanotrophic bacteria enriched from an anaerobic methane-oxidizing microbial community
    Elsevier, Biofilm, june 2021
    doi.org/10.1016/j.bioflm.2021.100054
  6. Chicano Tadeo Moreno, Dietrich Lea, Almeida Naomi M. de, Akram Mohd., Hartmann Elisabeth, Leidreiter Franziska, Leopoldus Daniel, Mueller Melanie, Sanchez Ricardo, Nuijten Guylaine H.L., Reimann Joachim, Seifert Kerstin-Aniko, Schlichting Ilme, Niftrik Laura van, Jetten Mike S.M., Dietl Andreas, Kartal Boran, Parey Kristian & Barends Thomas R.M.
    Structural and functional characterization of the intracellular filament-forming nitrite oxidoreductase multiprotein complex
    Nature Microbiology, open access, 15 July 2021
    doi.org/10.1038/s41564-021-00934-8
  7. Claret Fernandez Laura, Mesman R., Niftrik L. van
    The Anammoxosome Organelle: The power plant of Anaerobic Ammonium-oxidizing (Anammox) bacteria
    Springer, Microbiology Monographs book series, volume 34, Jan 2021
    Bacterial Organelles and Organelle-like Inclusionspp 107-123
  8. Coban Oksana, Rasigraf Olivia, Jong Anniek E.E. de, Spott Oliver, Bebout Brad M.
    Quantifying potential N turnover rates in hypersaline microbial mats by 15N tracer techniques
    Environmental Microbiology, February 2021
    DOI: 10.1128/AEM.03118-20
  9. Dalcin Martins Paula, Jong Anniek de, Lenstra Wytze K., Helmond Niels A.G.M. van, Slomp Caroline, Jetten Mike S.M., Welte Cornelia U., Rasigraf Olivia
    Enrichment of novel Verrucomicrobia, Bacteroidetes, and Krumholzibacteria in an oxygen-limited methane- and iron-fed bioreactor inoculated with Bothnian Sea sediments
    MicrobiologyOpen, February 2021
    https://doi.org/10.1002/mbo3.1175
  10. Dalcin Martins Paula, Echeveste Maider J., Arshad Arslan, Kurth Julia, Ouboter Heleen, Jetten Mike S.M., Welte Cornelia
    Unraveling nitrogen, sulfur and carbon metabolic pathways and microbial community transcriptional responses to substrate deprivation and toxicity stresses in a bioreactor mimicking anoxic brackish coastal sediment conditions
    BioRxiv, August 2021
    doi: https://doi.org/10.1101/2021.08.31.458400
  11. Daumann, L.J. & Op den Camp, H.J.M. (2021).
    Chapter 12: The Biochemistry of Rare Earth Elements. In: Metals, Microbes, and Minerals: The Biogeochemical Side of Life,  Vol. 21 of Metal Ions in Life Sciences, Eds. Kroneck P.M.H. & Sosa Torres M.E., Series Eds. Sigel, A. Freisinger, E. & Sigel, R.K.O.; Walter de Gruyter Verlag, Berlin, Germany, pp. 299–324
  12. Ferousi Christina, Schmitz Rob A, Maalcke Wouter J, Lindhoud Simon, Versantvoort Wouter, Jetten Mike S.M., Reimann Joachim, Kartal Boran
    Characterization of a nitrite-reducing octaheme hydroxylamine oxidoreductase that lacks the tyrosine crosslink
    J Biol Chem, feb 2021
    doi: 10.1016/j.jbc.2021.100476
  13. Glodowska Martyna, Schneider Magnus, Eiche Elisabeth, Kontny Agnes, Neumann Thomas, Straub Daniel, Berg Michael, Prommer Henning, Bostick Benjamin C. , Nghiem Athena A., Schneider M. , Kleindienst Sara, Kappler Andreas, Cirpka O.A, Rathi B., Lightfoot M., Stopelli E., Berg M. Kipfer R., Winkel L., Viet Pham Hung, Pham Trang, Mai Lan Vi, Viet Nga
    Fermentation, methanotrophy and methanogenesis influence sedimentary Fe and As dynamics in As-affected aquifers in Vietnam
    Elsevier, Science of The Total Environment, Available online 17 March 2021, 146501
    doi.org/10.1016/j.scitotenv.2021.146501
  14. Glodowska Martyna, Schneider Magnus, Eiche Elisabeth, Kontny Agnes, Neumann Thomas, Straub Daniel, Kleindienst Sara, Kappler Andreas
    Microbial transformation of biogenic and abiogenic Fe minerals followed by in-situ incubations in an As-contaminated vs. non-contaminated aquifer
    Environmental Pollution, online 26 March 2021
    doi.org/10.1016/j.envpol.2021.117012
  15. Godin Ofélia, Botelho Raquel, Albuquergue Luciana, Wiegand Sandra, Kallscheuer Nicolai, Costa Milton S. da, Lobo-da-Cunha Alexandre, Jogler Christian, Lage Olga Maria
    Bremerella alba snov., a novel planctomycete isolated from the surface of the macroalga Fucus spiralis
    Systematic and Applied Microbiology, online 15 March 2021
    doi.org/10.1016/j.syapm.2021.126189
  16. González-Cabaleiro Rebeca, Martinez-Rabert Eloi, Argiz Lucia, Kessel Maartje AHJ van, Smith Cindy
    A framework based on fundamental biochemical principles to engineer microbial community dynamicsCurrent Opinion in Biotechnology, Volume 67, February 2021
    https://doi.org/10.1016/j.copbio.2021.01.001
  17. Hogendoorn Carmen, Picone Nunzia, Hout Femke van, Vijverberg Sophie, Poghosyan Lianna, Alen Theo van, Frank Jeroen, Pol Ajran, Gagliano Antonia L., Jetten Mike S.M., D’Alessandro Walter, Quatrini Paola and Op den Camp Huub
    Draft genome of a novel methanotrophic Methylobacter sp. from the volcanic soils of Pantelleria IslandAntonie van Leeuwenhoek, February 2021
    doi.org/10.1007/s10482-021-01525-7
  18. Kallscheuer Nicolai, Rast Patrick, Jogler Mareike, Wiegand Sandra, Kohn Timo, Boedeker Christian, Jeske Olga, Heuer Anja, Quast Christian, Oliver Frank, Glöckner Oliver, Rohde Manfred, Jogler Christian
    Analysis of bacterial communities in a municipal duck pond during a phytoplankton bloom and isolation of Anatilimnocola aggregata gen. nov., sp. nov., Lacipirellula limnantheis sp. nov. and Urbifossiella limnaea gen. nov., sp. nov. belonging to the phylum Planctomycetes
    Environmental Microbiology, 2021
    doi.org/10.1111/1462-2920.15341
  19. Kallscheuer N., Jogler C., Peeters Stijn H., Boederker C., Jogler M., Heuer A., Jetten Mike S.M., Rohde M. & Wiegand S.
    Mucisphaera calidilacus gen. nov., sp. nov., a novel planctomycete of the class Phycisphaerae isolated in the shallow sea hydrothermal system of the Lipari Islands.
    Antonie van Leeuwenhoek, January 2022
    doi.org/10.1007/s10482-021-01707-3
  20. Kessel Maartje A.H.J. van, Stultiens Karin, Pol Arjan, Jetten Mike S.M., Kartal Boran, Op den Camp Huub J.M.
    Simultaneous anaerobic and aerobic ammonium and methane oxidation under oxygen limitation
    American Society for Microbiology Journals, April 23, 2021
    DOI: 10.1128/AEM.00043-21
  21. Kleerebezem Robbert, Lücker Sebastian
    Cyclic Conversions in the Nitrogen Cycle
    Front. Microbiol., February 2021
     doi: 10.3389/fmicb.2021.622504
  22. Kox Martine, Smolders Alfons, Speth Daan R., Lamers Leon P., Camp Huub op den, Jetten Mike S.M. and Kessel Maartje A. van
    A novel laboratory-scale mesocosm setup to study methane emission mitigation by Sphagnum mosses and associated methanotrophs
    Front. Microbiol., march 2021
    doi: 10.3389/fmicb.2021.651103
  23. Kurth Julia Maria, Müller Marie-Caroline, Welte Cornelia Ulrike and Wagner Tristan
    Structural Insights into the Methane-Generating Enzyme from a Methoxydotrophic Methanogen Reveal a Restrained Gallery of Post-Translational Modifications
    Microorganisms april 2021
    doi.org/10.3390/microorganisms9040837
  24. Kurth Julia M., Nobu Masaru K., Tamaki Hideyuki, Jonge Dadieh de, Berger Stefanie, Jetten Mike S.M., Yamamoto Kyosuke Mayumi Daisuke, Sakata Susumu, Bai Liping, Cheng Lei, Lund Nielsen Jeppe, Kamagata Yoichi, Wagner Traistan & Welte Cornelia U.
    Methanogenic archaea use a bacteria-like methyltransferase system to demethoxylate aromatic compounds
    The ISME Journal, june 2021
    doi.org/10.1038/s41396-021-01025-6
  25. Lawson Christopher E., Nuijten Guylaine H. L., Graaf Rob M. de, Jacobson Tyler B., Pabst Martin, Stevenson David. M., Jetten Mike S. M., Noguera Daniel R., McMahon Katherine D., Amador-Noguez Daniel & Lücker Sebastian
    Autotrophic and mixotrophic metabolism of an anammox bacterium revealed by in vivo 13C and 2H metabolic network mappingThe ISME Journal volume 15, pages 673–687(2021)
    doi.org/10.1038/s41396-020-00805-w
  26. Lawson Christopher E., Mundinger Aniela B., Koch Hanna, Jacobson Tyler B., Weathersby Coty A., Jetten Mike S.M., Pabst Martin, Amador-Nogues Daniel, Noguera Daniel R., McMahon Katherine, Lücker Sebastian
    Investigating the Chemolithoautotrophic and Formate Metabolism of Nitrospira moscoviensis by Constraint-Based Metabolic Modeling and 13C-Tracer Analysis
    ASM Journals/mSystems, August 2021
    doi.org/10.1128/mSystems.00173-21
  27. Li Jiyun, Hua Zheng-Shuang, Liu Tao, Wang Chengwen, Li Jie, Bai Ge, Lücker Sebastian, Jetten Mike S.M., Zheng Min & Guo Jiahnhua
    Selective enrichment and metagenomic analysis of three novel comammox Nitrospira in a urine-fed membrane bioreactor
    ISME Communications volume 1, Article number: 7 (2021)
    doi.org/10.1038/s43705-021-00005-3
  28. Lippmann Tanya J.R., Zandt Michiel in ’t Zandt, Putten Nathalie N.L. van der, Busschers Freek S., Hijma Marc P., Velden Pieter van der, Groot Tim de, Aalderen Zicarlo van, Miesel Ove H., Slomp Caroline P., Niemann Helge, Jetten Mike S.M., Dolman Han A.J. and Welte Cornelia U.
    Microbial activity, methane production, and carbon storage in Early Holocene North Sea peats
    Biogeosciences, 18, 5491–5511, 2021
    https://doi.org/10.5194/bg-18-5491-2021
  29. Pabst Martin, Grouzdev Denis S, Lawson Christopher E., Kleikamp Hugo B.C., Ram Carol de, Louwen Rogier, Lin Yue Mei, Lücker Sebastian, Loosdrecht Mark CM. van, Laureni Michele
    A general approach to explore prokaryotic protein glycosylation reveals the unique surface layer modulation of an anammox bacterium
    ISME J. 2021 Aug 2.
    doi: 10.1038/s41396-021-01073-y.
  30. Pelsma Koen A.J., Zandt Michiel H. in ‘t, Camp Huub J.M. op den, Jetten Mike S.M., Dean Joshua F., Welte Cornelia U.
    Amsterdam urban canals contain novel niches for methane-cycling microorganisms
    Environmental Biology, December 2021
    doi: 10.1111/1462-2920.15864
  31. Picone Nunzia, Blom Pieter, Wallenius Anna, Hogendoorn Carmen, Mesman Rob, Cremers Geert, Gagliano Antonia L., D’Allesandro Walter D., Quatrini Paola, Jetten Mike S.M., Pol Arjan and Op den Camp Huub, J.M. Methylacidimicrobium thermophilum AP8, a Novel Methane- and Hydrogen-Oxidizing Bacterium Isolated From Volcanic Soil on Pantelleria Island, Italy Front. Microbiol., 12 February 2021
    doi.org/10.3389/fmicb.2021.637762
  32. Picone, N., Blom, P., Hogendoorn, C., Frank, J., van Alen, T.A., Pol, A., Gagliano, A.L., Jetten, M.S.M., D'Alessandro, W., Quatrini, P. and Op den Camp, H.J.M.
    Metagenome assembled genome of a novel verrucomicrobial methanotroph from Pantelleria Island.
    Front. Microbiol. 12: 666929
    doi: 10.3389/fmicb.2021.666929
  33. Rios-Miguel Ana, Jetten Mike S.M., Welte Cornelia U.
    Effect of concentration and hydraulic reaction time on the removal of pharmaceutical compounds in a membrane bioreactor inoculated with activated sludge
    Biotechnology & Applied Microbiology, 15 June 2021
    doi.org/10.1111/1751-7915.13837
  34. Sakoula Dimitra, Smith Garrett J., Frank Jeroen, Mesman Rob J., Kop Linnea F.M., Jetten Mike S.M., Kessel Maartje A.H.J. van, Lücker Sebastian
    An activity-based labelling method for the detection of ammonia and methane-oxidizing bacteria
    ISME journal, november 2021
    doi.org/10.1038/s41396-021-01144-0
  35. Sakoula Dimitra, Koch Hanna, Frank Jeroen, Jetten Mike S. M., van Kessel Maartje A. H. J.  & Lücker Sebastian
    Enrichment and physiological characterization of a novel comammox Nitrospira indicates ammonium inhibition of complete nitrification
    The ISME Journal volume 15, pages1010–1024(2021)
    doi.org/10.1038/s41396-020-00827-4
  36. Schildkraut J.A., Coolen J.P.M., Burbaud S., Sangen J.J.N., Kwint M.P.,  Floto A., Op den Camp H.J.M., te Brake L.H.M., Wertheim H.F.L., Neveling K., Hoefsloot W. & van Ingen J. 
    RNA-sequencing elucidates drug-specific mechanisms of antibiotic tolerance and resistance in M. abscessus.   
    Antimicrobial Agents And Chemotherapy, online oktober 2021
    doi:10.1128/AAC.01509-21
  37. Schmitz Rob A., Peeters Stijn H., Versantvoort Wouter, Picone Nunzia, Pol Arjan, Jetten Mike S.M., Op den Camp Huub J.M. Verrucomicrobial methanotrophs: ecophysiology of metabolically versatile acidophiles
    FEMS Microbiology Reviews, February 2021
    doi.org/10.1093/femsre/fuab007
  38. Schmitz, R.A., Picone, N., Singer, H., Dietl, A., Seifert, K.-A., Pol, A., Jetten, M.S.M., Barends, T.R.M., Daumann, L.J. & Op den Camp, H.J.M.
    Neodymium as metal cofactor for biological methanol oxidation: structure and kinetics of a XoxF1-type methanol dehydrogenase
    Mbio, September 2021
    doi.org/10.1128/mBio.01708-21
  39. Schrader Sarah M, Botella Hélène, Jansen Robert, Ehrt Sabine, Rhee Kyu, Nathan Carl, Vaubourgeix Julien
    Multiform antimicrobial resistance from a metabolic mutation
    Sci Adv, August 2021
    DOI: 10.1126/sciadv.abh2037
  40. Shanyun Wang, Xiaomin Wang, Yingying Jiang, Chang Han, Mike S. M. Jetten, Lorenz Schwark, and Guibing Zhu
    Abundance and Functional Importance of Complete Ammonia Oxidizers and Other Nitrifiers in a Riparian Ecosystem
    Environ. Sci. Technol. 2021, March 18
    doi.org/10.1021/acs.est.0c00915
  41. Stackebrandt, E., Mondotte, J.A., Fazio, L.L. & Jetten Mike S.M.
    Authors need to be prudent when assigning names to microbial isolates
    Arch Microbiol 203, 5845–5848 (2021)
    doi.org/10.1007/s00203-021-02599-7
  42. Stackebrandt, E., Mondotte, J.A., Fazio, L.L. & Jetten Mike S.M.
    Authors Need to be Prudent When Assigning Names to Microbial Isolates
    Current Microbiology 78(80), November 2021
    doi.org/10.1007/s00284-021-02678-4
  43. Stackebrandt, E., Mondotte, J.A., Fazio, L.L. & Jetten Mike S.M.
    Authors Need to be Prudent When Assigning Names to Microbial Isolates
    Antonie van Leeuwenhoek, November 2021
    doi.org/10.1007/s10482-021-01675-8
  44. Welte Cornelia U., Graaf Rob de, Dalcin Martins Paula, Jansen Robert S., Jetten Mike S.M., Kurth Julia M.
    A novel methoxydotrophic metabolism discovered in the hyperthermophilic archaeon Archaeoglobus fulgidus
    Society for Applied Microbiology, April 2021
    doi.org/10.1111/1462-2920.15546
  45. Wallenius Anna, Dalcin Martins Paula, Slomp Caroline P. and Jetten Mike S.M.
    Anthropogenic and environmental constraints on the microbial methane cycle in coastal sediments
    Front. Microbiol., jan 2021
    doi: 10.3389/fmicb.2021.631621
  46. Wiegand Sandra, Rast Patrick, Kallscheuer Nicolai, Jogler Mareike, Heuer Anja, Boedeker Christian, Jeske Olga, Kohn Timo, Vollmers John, Kaster Anne-Kristin, Quast Christian, Glöckner Frank Oliver, Rohde Manfred and Jogler Christian
    Analysis of Bacterial Communities on North Sea Macroalgae and Characterization of the Isolated Planctomycetes Adhaeretor mobilis gen. nov., sp. nov., Roseimaritima multifibrata sp. nov., Rosistilla ulvae sp. nov. and Rubripirellula lacrimiformis sp. nov.
    Microorganisms 2021, 9(7), 1494;
    doi.org/10.3390/microorganisms9071494
  47. Yang Sizhong, Liebner Susanne, Walz Josefine, Knoblauch Christian, Bornemann Till L.V., Probst Alexander J., Wagner Dirk, Jetten Mike S.M., Zandt in ‘t Michiel
    Effects of a long-term anoxic warming scenario on microbial community structure and functional potential of permafrost-affected soil
    onlinelibrary.wiley.com, September 2021
    doi.org/10.1002/ppp.2131
  48. Zhu Guibing, Wang Xiaomin, Yang Ting, Su Jianqiang, Qin , Yu, Wang Shanyun, Gillings Michael, Wang Cheng, Ju Feng, Lan Bangrui, Liu Chunlei, Li , Hu, Long Xi-En, Wang Xuming, Jetten Mike S. M., Wang Zifa & Zhu Yong-Guan Air pollution could drive global dissemination of antibiotic resistance genes
    The ISME Journal volume 15, pages 270–281(2021)
    doi.org/10.1038/s41396-020-00780-2
  49. Zou, B., Huang, Y., Zhang, P-P., Ding, X-M., Op den Camp, H.J.M. & Quan, Z-X. (2021)
    Horizontal gene transfer of copper-containing membrane-bound monooxygenase (CuMMO) and di-iron soluble monooxygenase (SDIMO) in ethane- and propane-oxidizing Rhodococcus
    Appl. Environ. Microbiol. AEM.00227-21
    doi: 10.1128/AEM.00227-21
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