Publications 2022

  1. Al Danaf, N., Kretzschmar, J., Jahn, B., Singer, H., Pol, A., Op den Camp, H.J.M. Steudtner, R., Lamb, D., Drobot, B. & Daumann, L.J. (2022).
    Studies of pyrroloquinoline quinone species in solution and in lanthanide-dependent methanol dehydrogenases.
    Phys. Chem. Chem. Phys. June 2022
    doi: 10.1039/d2cp00311b
  2. Almeida Eduarda, Henriques Valentina, Siegand Sandra, Albuquergue Luciana, Schumann Peter, Kohn Timo, Jogler Christian, Simoes da Costa Milton, Lobo-da-Cunha Alexandre, Carvalho Maria de Fatima, Lagel Olga Maria, Salsipaludibacter albus gen. nov., sp. nov., a novel actinobacterial strain isolate from a Portuguese solar saltern and proposal of Salsipaludibacteraceae fam. nov. and Salsipaludibacterales ord. nov.
    International Journal of Systematic and Evolutionary Microbiology, Volume 72 Issue 2
    doi: https://doi.org/10.1099/ijsem.0.005228
  3. Berben, T., Forlano Bó, F., in ‘t Zandt, M.H. et al.The Polar Fox Lagoon in Siberia harbours a community of Bathyarchaeota possessing the potential for peptide fermentation and acetogenesis.Antonie van Leeuwenhoek , August 2022 doi.org/10.1007/s10482-022-01767-z
  4. Cai, M., Li, S., Ye, F., Hong, Y., Wu, J., Lü, M., Op den Camp H.J.M. & Wang, Y.
    Artificial ponds as hotspots of nitrogen removal in agricultural watershed
    Biogeochemistry, April 2022 
    doi: 10.1007/s10533-022-00928-6
  5. Coolen Silvia, Rogowska-van der Molen Magda, Welte Cornelia U.
    The secret life of insect-associated microbes and how they shape insect-plant interactions
    FEMS Microbiol Ecol, July 2022
    DOI: 10.1093/femsec/fiac083
  6. Cotto Marie, Vilardi Katherine J., Huo Linxuan, Fogarty Emily C., Khunjar Wendell, Wilson Christopher, Clippeleir Haydee De, Gilmore Kevin, Bailey Erika, Lucker Sebastian, Pinto Ameet J.
    Low diversity and microdiversity of comammox bacteria in wastewater systems suggests wastewater-specific adaptation within the Ca. Nitrospira nitrosa cluster
    BioRxiv, jun 2022
    doi: https://doi.org/10.1101/2022.06.11.495745
  7. Cremers, G., Jetten, M.S.M., Op den Camp, H.J.M. & Lücker, S. (2022).
    Metascan: METabolic Analysis, SCreening and ANnotation of Metagenomes
    Front. Bioinform. 2: 861505
    doi: 10.3389/fbinf.2022.861505
  8. Dalcin Martins, P., Echeveste, M.J., Arshad, A., Kurth, J., Ouboter, H., Op den Camp, H.J.M., Jetten, M.S.M. & Welte, C.U.
    Unraveling nitrogen, sulfur and carbon metabolic pathways and microbial community transcriptional responses to substrate deprivation and toxicity stresses in a bioreactor mimicking anoxic brackish coastal sediment conditions
    Front. Microbiol. 13: 798906, 2022
    doi: 10.3389/fmicb.2022.798906
  9. Dalcin Martins Paula, Molevad de Joao P.R.C., Lenstra K., Wallenius A., Echeveste Medrano Mailder J., Hermans Martijn, Slomp Caroline P., Welte Cornelia U., Jetten Mike S.M., Helmond Niels van
    Sulfide toxicity as key control on anaerobic oxidation of methane in eutrophic coastal
    BioRxiv, june 2022
    doi.org/10.1101/2022.02.10.479873
  10. Dalfen, I., Pol, A. & Borisov, S.M.
    Optical Oxygen Sensors Show Reversible Cross-Talk and/or Degradation in the Presence of Nitrogen Dioxide
    ACS Publications, september 2022
    doi: 10.1021/acssensors.2c01385
  11. Danaf, N. Al, Kretzschmar, J., Jahn, B., Singer, H., Pol, A., Camp, H.J.M. op den, Steudtner R., Lamb D.C., Drobot B. and Daumann L.J.
    Studies of pyrroloquinoline quinone species in solution and in lanthanide-dependent methanol dehydrogenases.
    PCCP Physical Chemistry Chemical Physics, 2022 (25), 15397-15405.
    doi: https://doi.org/10.1039/d2cp00311b
  12. Daumann, L.J., Pol, A., Op den Camp, H.J.M. & Martinez-Gomez, N.C. (2022) A perspective on the role of lanthanides in biology: discovery, open questions and possible applications
    Adv. Microbiol. Physiol.
    doi: https://doi.org/10.1016/bs.ampbs.2022.06.001
  13. Faust Valentino, Alen Theo A. van, Camp Huub J.M. Op den, Vlaeminck Siegfried E., Ganigueef Ramon, Boone Nico, Udertab Kai M. Ammonia oxidation by novel "Candidatus Nitrosacidococcus urinae" is sensitive to process disturbances at low pH and to iron limitation at neutral pHElsevier, Water Research, October 2022 doi.org/10.1016/j.wroa.2022.100157
  14. Glodowska Martyna, Welte Cornelia U., Kurth Julia M.
    Metabolic potential of anaerobic methane oxidizing archaea for a broad spectrum of electron acceptors
    Adv Microb Physiol, February 2022
    doi: 10.1016/bs.ampbs.2022.01.003
  15. Glodowska Martyna, Ma Yinxiao, Smith Garrett, Kappler Andreas, Jetten Mike S.M., Welte Cornelia
    Nitrate leaching and its implication for Fe and As mobility in a Southeast Asian aquifer
    bioRxiv, October 2022
    doi: https://doi.org/10.1101/2022.10.07.511258
  16. Henriet Stefanie S.V., Langereis jeroen D., Lo Stefphanie W., Bentley Stephen, Mesman Rob J., Fejzi Zina, Niftrik Laura van, Sorge Nina M. van, Wertheim Heiman F.L., Jonge Marien I. de, Cremers Amelieke, J.H.
    Endocarditis caused by non-typeable Streptococcus pneumoniae
    Clin Infect Dis, february 2022
    DOI: 10.1093/cid/ciac079
  17. Hester Eric, Vaksmaa Annika, Giampiero Vale, Stefano Monaco, Jetten Mike, Luke Claudia
    Effect of water management on microbial diversity and composition in an Italian rice field system
    FEMS Microbiology Ecology, 16 February 2022
    doi.org/10.1093/femsec/fiac018
  18. Jonge Niek F. de, Louwen Joris R., Chekmeneva Elena, Camuzeaux Stephane, Vermeir Femke J., Jansen Robert S., Huber Florian, Hooft Justin J.J. van der 
    MS2Query: Reliable and Scalable MS2 Mass Spectral-based Analogue SearchBioRxiv, july 2022
    doi: https://doi.org/10.1101/2022.07.22.501125
  19. Kalapothakis, Y. Miranda, K. Molina, D.A.M., Mamede Costa Andrade Conceição, I., Larangote, D., Op den Camp, H.J.M., Kalapothakis, E., Chávez-Olórtegui, C. &Borges, A.
    An overview of Tityus cisandinus scorpion venom: Transcriptome and mass fingerprinting reveal conserved toxin homologs across the Amazon region and novel lipolytic components.
    Int. J. Biol. Macromol. On line first 22-11-2022
    doi: 10.1016/j.ijbiomac.2022.11.185
  20. Kallscheuer Nicolai, Jogler Christian, Peeters Stijn H., Boedeker Christian, Jogler Mareike, Heuer Anja, Jetten Mike S.M., Rohde Manfred and Wiegand Sandra
    Mucisphaera calidilacus gen. nov., sp. nov., a novel planctomycete of the class Phycisphaerae isolated in the shallow sea hydrothermal system of the Lipari Islands
    Antonie van Leeuwenhoek, march 2022
    doi.org/10.1007/s10482-021-01707-3
  21. Keuter Sabine, Koch Hanna, Sass Katharina, Wegen Simone, Lee Natuschka, Lucker Sebastian, Spieck Eva
    Some like it cold: the cellular organization and physiological limits of cold-tolerant nitrite-oxidizing Nitrotoga
    sfam environmental biology, march 2022
    doi.org/10.1111/1462-2920.15958
  22. Kouba Vojtech, Hurkova Kamila, Nvratilova Klara, Kok Dana, Benakova Andrea, Laureni Michele, Vodickova Patricie, Podzimek Tomas, Lipvova Petra, Niftrik Laura van, Hajslova Jana, Loosdrecht Mark C.M. van, Weissbrodt David Gregory, Bartace k Jan
    Effect of temperature on the compositions of ladderane lipids in globally surveyed anammox populations
    Sci Total Environ, july 2022
    DOI: 10.1016/j.scitotenv.2022.154715
  23. Kouba V., Hurkova K., Navratilova K., Vejmelkova D., Benakova D. Benakova A., Laureni M., Vodickova P., Podzimek T., Lipova P., Niftrik L. van, Hajslova J., Loosdrecht M.C.M. van, Weissbrodt D.G., Bartacek J.
    On anammox activity at low temperature: effect of ladderane composition and process conditions
    Chem Eng J, May 2022
    doi: 10.1016/j.cej.2022.136712
  24. Kreutzfeldt, K., Jansen, R.S., Hartman, T., Gouzy, A., Wang, R., Krieger, I.V., Zimmerman M.D., Gengenbacher M., Sarathy J.P., Xie M., Dartois V. Sacchettini J.C., Rhee K.Y., Schnappinger D. and Ehrt S.
    CinA mediates multidrug tolerance in Mycobacterium tuberculosis.
    Nature Communications, 13 (1), 1-11.
    doi: https://doi.org/10.1038/s41467-022-29832-1
  25. Li L. Veronica, Yang He, Kévin Contrepois, Hailan Liu, Joon T. Kim, Amanda L. Wiggenhorn, Julia T. Tanzo, Alan Sheng-Hwa Tung, Xuchao Lyu, Peter-James H. Zushin, Robert S. Jansen, Basil Michael, Kang Yong Loh, Andrew C. Yang, Christian S. Carl, Christian T. Voldstedlund, Wei Wei, Stephanie M. Terrell, Benjamin C. Moeller, Rick M. Arthur, Gareth A. Wallis, Koen van de Wetering, Andreas Stahl, Bente Kiens, Erik A. Richter, Steven M. Banik, Michael P. Snyder, Yong Xu & Jonathan Z. Long
    An exercise-inducible metabolite that suppresses feeding and obesity
    Nature, June 2002
    doi.org/10.1038/s41586-022-04828-5
  26. Lightfoot Alexandra K., Brennewald Matthias S., Prommer Henning, Stopelli Emiliano, Berg Michael, Glodowska Martyna, Schneider Magnus, Kipfer Rolf
    Noble gas constraints on the fate of arsenic in groundwater
    Water Research, Available online 15 February 2022
    doi.org/10.1016/j.watres.2022.118199
  27. Lundkvist Stefan, Niaziorimi Fatemeh, Szeri Flora, Caffet Matthew, Terry Sharon F., Johansson Gunnar, Jansen Robert S., Wetering Koen van de
    A new enzymatic assay to quantify inorganic pyrophosphate in plasma
    Anal Bioanal Chem, 2022 Nov 19.
    doi: 10.1007/s00216-022-04430-8
  28. Maixner Frank, Mitterer Christian, Jager Heidi Y., Sarhan Mohamed S., Valverde Guido, Lucker Sebastian, Piombino-Mascali Dario, Szikossy Ildiko, Molnar Erika, Palfi Gyorgy, Pap Ildiko, Cipollini Giovanna, Zink Albert
    Linear polyacrylamide is highly efficient in precipitating and purifying environmental and ancient DNA
    Methods in Ecology and Evolution, March 2022
    doi.org/10.1111/2041-210X.13772
  29. Molen, M.A.R. van de, Nagornîi, D., Coolen, S., Graaf, R.M.d., Berben, T., Alen, T.v., Janssen, M.A.C.H., Rutjes, F.P.J.T., Jansen, R.S. & Welte, C.U. (2022).
    Insect Gut Isolate Pseudomonas sp. Strain Nvir Degrades the Toxic Plant Metabolite Nitropropionic Acid.
    Applied and Environmental Microbiology, 88 (19), 1-‘15.
    doi: https://doi.org/10.1128/aem.00719-22
  30. Niehues, H., Krieken, D.A. van der, Ederveen, T.H., Jansen, P.A.M., Niftrik, L. van, Mesman, R., Netea, M.G., Smits, J.P., Schalkwijk, J., Bogaard, E.H.J. van den & Zeeuwen, P.L.J.M.
    Antimicrobial Late Cornified Envelope Proteins: The Psoriasis Risk Factor Deletion of LCE3B/C Genes Affects Microbiota Composition.
    Journal of Investigative Dermatology, 142 (7), 1947-1955.e6. doi: https://doi.org/10.1016/j.jid.2021.11.036
  31. Nijman Thomas P.A., Lemmens Maxime, Lurling Miquel, Kosten Sarian, Welte Cornelia, Veraart Annelies J.
    Phosphorus control and dredging decrease methane emissions from shallow lakesSci Total Environ, july 2022
    doi: 10.1016/j.scitotenv.2022.157584
  32. Nolte, T.M., Peijnenburg, W., Rios Miguel, A.B., Zhang, Y. & Hendriks, A.J. Stoichiometric ratios for biotics and xenobiotics capture effective metabolic coupling to re(de)fine biodegradation.
    Water Research, 217, 1-16.
    doi: https://doi.org/10.1016/j.watres.2022.118333
  33. Ouboter Heleen, Berben Tom, Berger Stefanie, Jetten Mike S.M., Sleutels Tom, Heijne Annemiek ter and Welte Cornelia U.
    Methane-Dependent Extracellular Electron Transfer at the Bioanode by the Anaerobic Archaeal Methanotroph “Candidatus Methanoperedens
    Front. Microbiol., April 2022
    doi.org/10.3389/fmicb.2022.820989
  34. Pabst Martin, Grouzdev Denis S., Lawason Christopher E., Kleikamp Hugo B., Ram Carol de, Louwen Rogier, Lin Yue Mei, Lucker Sebastian, Loosdrecht Mark C.M. van & Laureni Michele
    A general approach to explore prokaryotic protein glycosylation reveals the unique surface layer modulation of an anammox bacterium
    The ISME Journal volume, february 2022
    doi.org/10.1038/s41396-021-01073-y
  35. Pelsma, K.A.J., in ’t Zandt, M.H., Op den Camp, H.J.M, Jetten, M.S.M., Dean, J.F. & Welte, C.U.
    Amsterdam urban canals contain novel niches for methane-cycling microorganisms
    Environ. Microbiol. 24(1): 82–97, 2022
    doi: 10.1111/1462-2920.15864
  36. Rios-Miguel Ana B., Smith Garrett J., Cremers Geert, Alen Theo van, Jetten Mike S.M., Camp Huub J.M. op den, Welte Cornelia U.
    Microbial paracetamol degradation involves a high diversity of novel amidase enzyme candidates
    BioRxiv, may 2022
    doi.org/10.1101/2022.05.05.490616
  37. Rios-Miguel Ana, Smith Garrett J., Cremers G., Alen Theo van, Jetten Mikes S.M., Op den Camp Huub, Welte Cornelia U.
    Microbial paracetamol degradation involves a high diversity of novel amidase enzyme candidates
    Water Research X, August 2022
    doi.org/10.1016/j.wroa.2022.100152
  38. Rodriguez-Ramos Josue A., Borton Mikayla A., McGiver Bridget B., Smith Garrett J., Solden Lindsey M., Shaffer Michael, Daly Rebecca A., Purvine Samuel O., Nicora Carrie D., Eder Elizabeth K., Lipton Mary, Hoyt David W., Stegen James C., Wrighton Kelly C.
    Genome-resolved metaproteomics decodes the microbial and viral contributions to coupled carbon and nitrogen cycling in river sediments
    bioRxiv, March 2022https://doi.org/10.1101/2022.03.11.484050
  39. Sakoula Dimitra, Smith Garrett J., Frank Jeroen, Mesman Rob J., Kop Linnea F.M., Blom Pieter, Jetten Mike S.M., Kessel Maartje A.H.J. van & Lucker Sebastian
    Universal activity-based labeling method for ammonia- and alkane-oxidizing bacteria
    The ISME Journal volume 16, 2022
    doi.org/10.1038/s41396-021-01144-0
  40. Schildkraut Jodie A., Coolen Jordy P.M., Burbaud Sophie, Sangen Jasper J.N., Kwint Michael P., Floto Andres R., Camp Huub J.M. Op den Camp, Brake Lindsey H.M. te, Wertheim Heiman F.L., Neveling Kornelia, Hoefsloot Wouter, Ingen Jakko van
    RNA Sequencing Elucidates Drug-Specific Mechanisms of Antibiotic Tolerance and Resistance in Mycobacterium abscessus
    Antimicrob Agents Chemother, January 2022
    doi: 10.1128/AAC.01509-21
  41. Schmitz, R.A., Mohammadi, S.S., van Erven, T., Berben, T., Jetten, M.S.M., Pol, A., & Op den Camp, H.J.M.
    Methanethiol consumption and hydrogen sulfide production by the thermoacidophilic methanotroph Methylacidiphilum fumariolicum
    SolV. Front. Microbiol. 13: 857442, 2022
    doi: 10.3389/fmicb.2022.857442
  42. Schmitz Rob A., Pelsma Koen A.J., Op den Camp Huub J.M.
    An alternative tetrahydrofolate pathway for formaldehyde oxidation in verrucomicrobial methanotrophs: Primer design for folD and ftfL and transformation of E. coli
    bioRxiv, august 2022
    doi.org/10.1101/2022.08.24.504922
  43. Schoelmerich MC, Ouboter HT, Sachdeva R, Penev PI, Amano Y, West-Roberts J, Welte CU, Banfield JF.
    A widespread group of large plasmids in methanotrophic Methanoperedens archaea.
    Nat Commun. 2022 Nov 18;13(1):7085
    doi: 10.1038/s41467-022-34588-9.
  44. Shetty, S., Kuipers, B., Atashgahi, S., Aalvink, S., Smidt, H. & Vos, W. de
    Inter-species Metabolic Interactions in an In-vitro Minimal Human Gut Microbiome of Core Bacteria.
    npj biofilms and microbiomes, 8 (1), 1-13.
    doi: https://doi.org/10.1038/s41522-022-00275-2
  45. Stackebrandt Erko, Mondotte Juan A., Lembo Fazio Luigi and Jetten Mike S.M.
    Authors need to be prudent when assigning names to microbial isolates
    Antonie van Leeuwenhoek, January 2022
    doi.org/10.1007/s10482-021-01675-8
  46. Stempels, F.C., Janssens, M.H., Beest, M.B.A. ter, Mesman, R., Revelo, N.H., Ioannidis, M. & Bogaart, G. van den
    Novel and conventional inhibitors of canonical autophagy differently affect LC3-associated phagocytosis.
    FEBS Letters, 596 (4), 491-509.
    doi: https://doi.org/10.1002/1873-3468.14280
  47. Suarez Carolina, Dalcin Martins Paula, Jetten Mike S.M., Karačić, Sabina, Oskar Wilén Britt Marie, Modin Oska, Hagelia Per, Hermansson Malte, Persson Frank
    Metagenomic evidence of a novel family of anammox bacteria in a subsea environment
    Environmental Biology, April 2022
    doi.org/10.1111/1462-2920.16006
  48. Timmermans Suzanne B.P.E., Mesman Rob, Blezer Kim J.R., Niftrik Laura van, Hest Jan C.M. van
    Cargo-loading of hybrid cowpea chlorotic mottle virus capsids via a co-expression approach
    Elsevier, Science Direct, December 2022, Virology 577
    https://doi.org/10.1016/j.virol.2022.10.011
  49. Vaksmaa Annika, Egger Matthias, Lucke Claudia, Dalcin Martins Paula, Rossellief Riccardo, Abdala Asbun Alejandro, Niemann Helge Microbial communities on plastic particles in surface waters differ from subsurface waters of the North Pacific Subtropical Gyre
    Marine Pollution Bulletin, September 2022 doi.org/10.1016/j.marpolbul.2022.113949
  50. Venetz J., Zygadlowska O.M., Lenstra, W.K., Helmond N.A.G.M. van,
    Versatile methanotrophs form an active methane biofilter in the oxycline of a seasonally stratified coastal basin,
    bioRxiv., 2022
    doi: https://doi.org/10.1101/2022.10.28.513710
  51. Welte, C.U.
    Archaeen im globalen Methanzyklus.
    Biospektrum, 28 (3), 246-249.
    doi: https://doi.org/10.1007/s12268-022-1753-2
  52. Yang Sizhong, Anthony Sara E., Jenrich Maren, Zandt Michiel in 't, Strauss Jens, Overduin Pier Paul, Grosse Guido, Angelopoulos Michael, Biskaborn Boris K., Grigoriev Mikhaill N., Wagner Dirk, Knoblauch Christian, Jaeschke Andrea, Rethemeyer janet, Kallmeyer Jens, Liebner Susanne
    Anaerobic methane oxidizing archaea offset sediment methane concentrations in Arctic thermokarst lagoons
    BioRxiv, june 2022
    doi: https://doi.org/10.1101/2022.06.20.496783
  53. Ye F, Hong Y, Wu J, Yi X, Op den Camp HJM, Moore SS, Vamerali T and Wang Y Succession of soil microbial community in a developing mid-channel bar: The role of environmental disturbance and plant community.
    Front. Microbiol., August 2022
    doi: 10.3389/fmicb.2022.970529
  54. Zhu Guibing, Wang Xiaomin, Wang Shanyun, Yu Longbin, Armanbek Gawhar, Yu Jie, Jiang Liping, Yuan Dongdan, Guo Zhongrui, Zhang Hanrui, Lei Zhang, Schwark Lorenz, Jetten Mike S.M., Kumar Yadav Kumar Asheesh, Zhu Yong-Guan
    Towards a more labor-saving way in microbial ammonium oxidation: A review on complete ammonia oxidization (comammox)
    Science of The Total Environment, July 2022, volume 829
    https://doi.org/10.1016/J.SCITOTENV.2022.154590