Image processing and analysis
The General Instrumentation department provides support in image management, processing and analysis either with the implementation of custom-made software (macros in ImageJ) or with training of individual users at the following software available:
ImageJ / FIJI
Powerful freeware software for image manipulation and analysis. Contains a huge variety of plugins and also gives the possibility of custom-made analysis macros implementation
Deconvolution software from SVI with modules for deconvolution of confocal and widefield images.
Freeware from Bitplane for 3D renderings.
Acquisition and handling of images acquired with a Leica microscope. Various versions of this software are installed in microscope PCs including modules like the 3D module for 3D rendering of z-stacks and Lightning and Thunder modules for computational clearing of confocal and widefield acquisitions.
Software (cygwin, etomo, 3dmod, drawing tools, PEET, Serial/cryo-EM), guides and tutorials for cryo-EM and (cryo) tomography TEM, alignment and modeling.
An experimental version of the powerful data management system runs on a limited storage server. The OMERO can handle all your images in a secure central repository. You can view, organize, analyze and share your data from anywhere you have internet access. Work with your images from a desktop app (Windows, Mac or Linux), from the web or from 3rd party software. Over 140 image file formats supported, including all major microscope formats.