Angeloni, F, Ouborg NJ & Leimu R (2011) Meta-analysis on the association of population size and life history with inbreeding depression in plants. Biological Conservation 144(1): 35-43.

Angeloni, F, Wagemaker CAM, Jetten MSM, Op den Camp HJM, Janssen-Megens EM, Francoijs K-J, Stunnenberg HG & Ouborg NJ (2011) De novo transcriptome characterization and development of genomic tools for Scabiosa columbaria L. Using next-generation sequencing techniques. Molecular Ecology Resources 11(4): 662-674.

Armas C, Miranda JD, Padilla FM & Pugnaire FI (2011) Special Issue: The Iberian Southeast (Editorial). Journal of Arid Environments 75:1241-1243

Bita CE, Zenoni S, Vriezen WH, Mariani C, Pezzotti M & Gerats T (2011) Temperature stress differentially modulates transcription in meiotic anthers of heat-tolerant and heat-sensitive tomato plants. BMC Genomics 12: article 384 (18p.)

Chen X, Visser EJW, de Kroon H, Pierik R, Voesenek LACJ & Huber H (2011) Fitness consequences of natural variation in flooding-induced shoot elongation in Rumex palustris. New Phytologist 190:409-420 DOI

de Jong M, Wolters-Arts M, Garcia-Martinez JL, Mariani C & Vriezen WH (2010) The Solanum lycopersicum AUXIN RESPONSE FACTOR 7 (SlARF7) mediates cross-talk between auxin and gibberellin signalling during tomato fruit set and development. Journal of Experimental Botany 62(2):617-626

Derksen J, Janssen GJ, Wolters-Arts M, Lichtscheidl I, Adlassnig W, Ovecka M, Doris F & Steer M (2011) Wall architecture with high porosity is established at the tip and maintained in growing pollen tubes of Nicotiana tabacum. Plant Journal 68(3):495-506

Donavan LA, Maherali H, Caruso CM, Huber H & de Kroon H (2011) The evolution of the worldwide leaf economics spectrum. Trends in Ecology and Evolution 26:88-95 DOI

Fritz C, Pancotto VA, Elzenga JTM, Visser EJW, Grootjans AP, Pol A, Iturraspe R, Roelofs JGM & Smolders AJP (2011) Zero methane emission bogs: extreme rhizosphere oxygenation by cushion plants in Patagonia. New Phytologist 190:398-408 DOI

Gerhold P, Pärtel M, Tackenberg O, Hennekens SM, Bartish I, Schaminée JHJ, Fergus AJF, Ozinga W & Prinzing A (2011) Phylogenetically poor plant communities receive more alien species, which more easily coexist with natives. American Naturalist 177:668-680 DOI

Harvey JA, van Dam NM, Raaijmakers CE, Bullock JM & Gols R (2011). Tri-trophic effects of inter- and intra-population variation in defence chemistry of wild cabbage (Brassica oleracea). Oecologia 166(2):421-431

Huber H, von Wettberg EJ, Aguilera A & Schmitt J (2011) Testing mechanisms and context dependence of costs of plastic shade avoidance responses in Impatiens capensis (Balsaminaceae). American Journal of Botany 98:1602-1612 DOI

Jansen J & Diemont WH (2011) Implementing NATURA 2000 in farmed landscapes: the Serra da Estrela, Portugal. Ekológia 30:133-140

Jongejans E, Allen MR, Leib AE, Marchetto KM, Pedatella NM, Peterson-Smith J, Rauschert ESJ, Ruggiero DC, Russo LA, Ruth LE, Sezen Z, Skarpaas O, Teller BJ, Warg LA, Yang S, Zhang R & Shea K (2011) Spatial dynamics of invasive Carduus thistles. In: Chan F, Marinova D & Anderssen RS (eds) MODSIM2011, 19th International Congress on Modelling and Simulation. Modelling and Simulation Society of Australia and New Zealand, December 2011, pp. 2514-2520. ISBN: 978-0-9872143-1-7 PDF

Jongejans E, Shea K, Skarpaas O, Kelly D & Ellner SP (2011) Importance of individual and environmental variation for invasive species spread: a spatial integral projection model. Ecology 92:86-97 PDF (pdf, 1.2 MB)

Kabouw P, Kos M., Kleine S, Vockenhuber EA, van Loon JJA, van der Putten WH, van Dam NM & Biere A (2011) Effects of soil organisms on aboveground multitrophic interactions are consistent between plant genotypes mediating the interaction. Entomologia Experimentalis et Applicata 139(3):197-206

Mathur V, Ganta S, Raaijmakers CE, Reddy AS, Vet LEM & van Dam NM (2011) Temporal dynamics of herbivore-induced responses in Brassica juncea and their effect on generalist and specialist herbivores. Entomologia Experimentalis et Applicata 139(3): 215-225

Mommer L & Visser EJW (2011) Root distribution in soils I. Root core sampling and destructive pot harvests. PrometheusWiki WWW

Mommer L, Dumbrell AJ, Wagemaker CAM & Ouborg NJ (2011) Belowground DNA based techniques: untangling the network of plant root interactions. Plant and Soil 348:115-121 DOI

Mommer L, Visser EJW, van Ruijven J, de Caluwe H, Pierik R & de Kroon H (2011) Contrasting root behaviour in two grass species: a test of functionality in dynamic heterogeneous conditions. Plant and Soil 344:347-360 PDF (pdf, 508 kB)

Padilla FM, Pugnaire FI, Valladares F, Armas F & Miranda JD (2011) Integrated paper sensors for quantification of photosynthetically active radiation. PrometheusWiki WWW

Padilla FM, Visser EJW & Mommer L (2011) Root distribution in soils II. Non-destructive measurements by minirhizotron image analysis. PrometheusWiki WWW

Pichersky E & Gerats T (2011) The plant genome: An evolutionary perspective on structure and function. Plant Journal 66(1):1-3

Pierre PS, Dugravot S, Ferry A, Soler R, van Dam NM & Cortesero AM (2011) Aboveground herbivory affects indirect defences of brassicaceous plants against the root feeder Delia radicum (Linnaeus): laboratory and field evidence. Ecological Entomology 36(3):326-334

Pierre PS, Jansen JJ, Hordijk CA, van Dam NM, Cortesero AM & Dugravot S (2011) Differences in volatile profiles of turnip plants subjected to single and dual herbivory above- and belowground. Journal of Chemical Ecology 37(4):368-377

Proost S, Pattyn P, Gerats T & van de Peer Y (2011) Journey through the past: 150 million years of plant genome evolution. Plant Journal 66(1):58-65

Reinhart KO, van der Putten WH, Tytgat T & Clay K (2011) Variation in specificity of soil-borne pathogens from a plant's native range versus its nonnative range. International Journal of Ecology 2011: Article ID 737298 (6p.)

Schipper AM, Lotterman K, Leuven RSEW, Ragas AMJ, de Kroon H & Hendriks AJ (2011) Plant communities in relation to flooding and soil contamination in a lowland river Rhine floodplain. Environmental Pollution 159:182-189 DOI

Skarpaas O, Shea K & Jongejans E (2011) Watch your time step: trapping and tracking dispersal in autocorrelated environments. Methods in Ecology and Evolution 2:407-415 eprint (pdf, 157 kB) DOI

Skarpaas O, Silverman EJ, Jongejans E & Shea K (2011) Are the best dispersers the best colonizers? Seed mass, dispersal and establishment in Carduus thistles. Evolutionary Ecology 25:155-169 eprint (pdf, 156 kB) DOI

van Dam NM & Heil M (2011) Multitrophic interactions below and above ground: en route to the next level. Journal of Ecology 99(1):77-88

van Dam NM & van der Meijden E (2011) Arole for metabolomics in plant ecology. Chapter 4, p.87-107. In: Hall RD (ed.) Annual Plant Reviews Volume 43: Biology of Plant Metabolomics, Wiley-Blackwell, Oxford, UK. 420p. ISBN: 9781405199544 (Print)

van der Waal C, de Kroon H, Heitkönig IMA, Skidmore AK, de Boer WF, Slotow R, Grant RC, Peel MPS, Kohi EM, de Knegt HJ & Prins HHT (2011) Scale of nutrient patchiness mediates resource partitioning between trees and grasses in a semi-arid savanna. Journal of Ecology 99:1124-1133 DOI

van der Waal C, Kool A, Meijer SS, Kohi E, Heitkönig IMA, de Boer WF, van Langevelde F, Grant RC, Peel MJS, Slotow R, Skidmore AK, de Knegt HJ, Mwakiwa E, Pretorius Y, van Wieren SE, Prins HHT & de Kroon H (2011) Large herbivores may alter vegetation structure of semi-arid savannas through soil nutrient mediation. Oecologia 165:1095-1107 PDF (pdf, 335 kB)

van Mölken T & Stuefer JF (2011) The potential of plant viruses to promote genotypic diversity via genotype × environment interactions. Annals of Botany 107:1391-1397 PDF (pdf, 206 kB)

van Mölken T, Sundelin T, Snetselaar R & Stuefer JF (2011) Highways for internal virus spread: Patterns of virus movement in the stoloniferous herb Trifolium repens. Botany 89:573-579 DOI

Vashisht D, Hesselink A, Pierik R, Ammerlaan JMH, Bailey-Serres J, Visser EJW, Pedersen O, van Zanten M, Vreugdenhil D, Jamar DCL, Voesenek LACJ & Sasidharan R (2011) Genetic variation of submergence tolerance among Arabidopsis thaliana accessions. New Phytologist 190:299-310 DOI

Vergeer, P. & N.J. Ouborg (2011) Milieu en Genetica, twee zijden van dezelfde natuurbeheermedaille. De levende Natuur 112(2): 84-87

Verhage A, Vlaardingerbroek I, Raaijmakers C, van Dam NM, Dicke M, Van Wees SCM & Pieterse CMJ (2011) Rewiring of the jasmonate signaling pathway in Arabidopsis during insect herbivory. Frontiers in Plant Science 2: article number 47 (12p.)

Visser MD, Jongejans E, van Breugel M, Zuidema PA, Chen YY, Kassim AR & de Kroon H (2011) Strict mast fruiting for a tropical dipterocarp tree: a demographic cost-benefit analysis of delayed reproduction and seed predation. Journal of Ecology 99:1033-1044 DOI

Visser MD, Muller-Landau HC, Wright SJ, Rutten G & Jansen PA (2011) Tri-trophic interactions affect density dependence of seed fate in a tropical forest palm. Ecology Letters 14:1093-1100 PDF (pdf, 261 kB)

Yang S, Jongejans E, Yang S & Bishop JG (2011) The effect of consumers and mutualists of Vaccinium membranaceum at Mount St. Helens: dependence on successional context. PLoS ONE 6:e26094 PDF (pdf, 700 kB)

Zhang R, Jongejans E & Shea K (2011) Warming increases the spread of an invasive thistle. PLoS ONE 6:e21725  PDF (pdf, 138 kB)

Zenoni S, D'Agostino N, Tornielli GB, Quattrocchio F, Chiusano ML, Koes R, Zethof J, Guzzo F, Delledonne M, Frusciante L, Gerats T & Pezzotti M (2011) Revealing impaired pathways in the an11 mutant by high-throughput characterization of Petunia axillaris and Petunia inflata transcriptomes. Plant Journal 68(1):11-27

Zenoni S, Fasoli M, Tornielli GB, Dal Santo S, Sanson A, de Groot P, Sordo S, Citterio S, Monti F & Pezzotti M (2011) Overexpression of PhEXPA1 increases cell size, modifies cell wall polymer composition and affects the timing of axillary meristem development in Petunia hybrida. New Phytologist 191:662-677