2012

Akman M, Bhikharie AV, McLean EH, Boonman A, Visser EJW, Schranz ME & van Tienderen PH (2012) Wait or Escape? Contrasting submergence tolerance strategies of Rorippa amphibia, Rorippa sylvestris and their hybrid. Annals of Botany 109:1263-1276 DOI

Angeloni, F., N. Wagenmaker, P. Vergeer & N.J. Ouborg (2012) Genomic toolboxes for conservation biologists. Evolutionary Applications 5(2): 130-143.

Bakker JP, Rosén E, Ozinga WA, Bretfeld M, Feldt T & Stahla J (2012) Long-term effects of scrub clearance and litter removal on the re-establishment of dry alvar grassland species. Annales Botanici Fennici 49(1-2):21-30

Bemer M, Karlova R, Ballester AR, Tikunov YM, Bovy AG, Wolters-Arts M, de Barros Rossetto P, Angenent GC & de Maagd RA (2012) The Tomato FRUITFULL Homologs TDR4/FUL1 and MBP7/FUL2 Regulate Ethylene-Independent Aspects of Fruit Ripening. Plant Cell 24(11):4437-4451

Bremer P, Jongejans E, Oostermeijer G & Willems J (2012) Planten tellen. Over demografisch onderzoek. KNNV 160 pages (Dutch book on plant demography; now also available as digi-book for iPad, tablet or smartphone)

Crespo E, Hordijk CA, De Graaf R, Samudrala D, Cristescu SM, Harren FJM & van Dam NM (2012) On-line detection of root-induced volatiles in Brassica nigra plants infested with Delia radicum L. rootfly larvae. Phytochemistry 84: 68-77.

Czerednik A, Busscher M, Bielen BAM, Wolters-Arts M, de Maagd RA & Angenent GC (2012) Regulation of tomato fruit pericarp development by an interplay between CDKB and CDKA1 cell cycle genes. Journal of Experimental Botany 63(7):2605-2617

Danner H, Samudrala D, Cristescu SM & van Dam NM (2012) Tracing hidden herbivores: Time-resolved non-invasive analysis of belowground volatiles by proton-tranfer-reaction mass spectrometry (PTR-MS). Journal of Chemical Ecology 38(6): 785-794

de Bello F, Price JN, Münkemüller T, Liira J, Zobel M, Thuiller W, Gerhold P, Götzenberger L, Lavergne S, Lepš J, Zobel K & Pärtel M (2012) Functional species pool framework to test for biotic effects on community assembly. Ecology 93(10): 2263-2273

de Kroon H, Hendriks M, van Ruijven J, Ravenek J, Padilla FM, Jongejans E, Visser EJW & Mommer L (2012) Root responses to nutrients and soil biota: drivers of species coexistence and ecosystem productivity. Journal of Ecology 100(1):6-15

Dengler J, Oldeland J, Jansen F, Chytrý M, Ewald J, Finckh M, Glöckler F, Lopez-Gonzalez G, Peet RK &, Schaminée JHJ (Eds.) (2012) Vegetation databases for the 21st century. Biodiversity & Ecology 4. 448p. ISSN 1613-9801

Gang H, Xue-yong Z, Padilla FM & Ha-lin Z (2012) Fine root dynamics and longevity of Artemisia halodendron reflect plant growth strategy in two contrasting habitats. Journal of Arid Environments 79:1-7

García-Palacios P, Maestre FT, Bardgett RD & de Kroon H (2012) Plant responses to soil heterogeneity and global environmental change. Journal of Ecology 100:1303-1314

Gielis J, Caratelli D, Fougerolle Y, Ricci PE, Tavkelidze I & Gerats T (2012) Universal natural shapes: From unifying shape description to simple methods for shape analysis and boundary value problems. PLoS One 7(9):e29324

Giorno F, Guerriero G, Baric S & Mariani C (2012) Heat shock transcriptional factors in Malus domestica: identification, classification and expression analysis. BMC Genomics 13: article 639 (13p.)

Heijmans K, Ament K, Rijpkema AS, Zethof J, Wolters-Arts M, Gerats T & Vandenbussche M (2012) Redefining C and D in the Petunia ABC. The Plant Cell 24(6):2305-2317

Hirsch BT, Visser MD, Kays R & Jansen PA (2012) Quantifying seed dispersal kernels from truncated seed-tracking data. Methods in Ecology and Evolution 3(3):595-602

Huber H, Chen X, Hendriks M, Keijsers D, Voesenek LACJ, Pierik R, Poorter H, de Kroon H & Visser EJW (2012) Plasticity as a plastic response: how submergence-induced leaf elongation in Rumex palustris depends on early life stage light and nutrient availability. New Phytologist 194:572-582

Jacquemyn H, De Meester L, Jongejans E & Honnay O (2012) Evolutionary changes in plant reproductive traits following habitat fragmentation and their consequences for population fitness. Journal of Ecology 100:76-87 PDF (pdf, 371 kB)

Jacquemyn H, Brys R, Davison R, Tuljapurkar S & Jongejans E (2012) Stochastic LTRE analysis of the effects of herbivory on the population dynamics of a perennial grassland herb. Oikos 121:211-218 eprint (pdf, 226 kB) DOI

Jongejans E & de Kroon H (2012) Matrix models. p.415-423. Hastings A & Gross L (eds.) Encyclopedia of Theoretical Ecology. Encyclopedias of the natural world Vol. 4. University of California Press, Berkeley, CA. 823p. ISBN 978-052-026-965-1.

Kabouw P, van Dam NM, van der Putten WH & Biere A (2012) How genetic modification of roots affects rhizosphere processes and plant performance. Journal of Experimental Botany 63(9): 3475-3483.

Lamers LPM, van Diggelen JMH, op den Camp HJM, Visser EJW, Lucassen ECHET, Vile MA, Jetten MSM, Smolders AJP & Roelofs JGM (2012) Microbial transformations of nitrogen, sulfur, and iron dictate vegetation composition in wetlands: a review. Frontiers in Microbiology 3: art. 156 (12p.) PDF (pdf, 2 MB)

Manoko, M.L.K., G.M. van der Weerden, R.G. van den Berg, & C. Mariani. A new tetraploid species of Solanum section Solanum (Solanaceae) from Tanzania. PhytoKeys 16: 65-74

Marchetto KM, Jongejans E, Shea K & Auhl R (2012) Water loss from flower heads predicts seed release in two invasive thistles. Plant Ecology and Diversity 5:57-65 DOI

Metcalf CJE, McMahon SM, Salguero-Gomez R & Jongejans E (2012) IPMpack: Builds and analyses Integral Projection Models (IPMs). R package on CRAN WWW

Miller TEX, Williams JL, Jongejans E, Brys R & Jacquemyn H (2012) Evolutionary demography of iteroparous plants: incorporating non-lethal costs of reproduction into integral projection models. Proceedings of the Royal Society B 279:2831-2840 DOI

Mommer L, van Ruijven J, Jansen C, van de Steeg HM & de Kroon H (2012) Interactive effects of nutrient heterogeneity and competition: implications for root foraging theory? Functional Ecology 26:66-73 PDF (pdf, 385 kB)

Nitsch L, Kohlen W, Oplaat C, Charnikhova T, Cristescu S, Michieli P, Wolters-Arts M, Bouwmeester H, Mariani C, Vriezen WH, Rieu I (2012) ABA-deficiency results in reduced plant and fruit size in tomato. Journal of Plant Physiology 169:878-883

Padilla FM, Mattingly WB, Swedo BL, Clay K & Reynolds HL (2012) Negative plant-soil feedbacks dominate seedling competitive interactions of North American successional grassland species. Journal of Vegetation Science 23:667-676

Pierre PS, Dugravot S, Cortesero AM, Poinsot D, Raaijmakers CE, Hassan HM & van Dam NM (2012) Broccoli and turnip plants display contrasting responses to belowground induction by Delia radicum infestation and phytohormone applications. Phytochemistry 73: 42-50.

Pleskot R, Pejchar P, Bezvoda R, Lichtscheidl IK, Wolters-Arts M, Marc J, Zarsky V & Potocky M (2012) Turnover of phosphatidic acid through distinct signaling pathways affects multiple aspects of pollen tube growth in tobacco. Frontiers in Plant Science 3: article number 54 (13p.)

Poorter H, Niklas KJ, Reich PB, Oleksyn J, Poot P & Mommer L (2012) Biomass allocation to leaves, stems and roots: meta-analyses of interspecific variation and environmental control. New Phytologist 193(1):30-50

Price JN, Hiiesalu I, Gerhold P & Pärtel M (2012) Small-scale grassland assembly patterns differ above and below the soil surface. Ecology 93:1290-1296

Qiu BL, van Dam NM, Harvey JA & Vet LEM (2012) Root and shoot jasmonic acid induction differently affects the foraging behavior of Cotesia glomerata under semi-field conditions. Biocontrol 57(3): 387-395

Schaminée JHJ, Hennekens SM & Ozinga WA (2012) The Dutch National Vegetation Database. – In: Dengler J, Oldeland J, Jansen F, Chytrý M, Ewald J, Finckh M, Glöckler F, Lopez-Gonzalez G, Peet RK &, Schaminée JHJ (Eds.) Vegetation databases for the 21st century. – Biodiversity & Ecology 4: 201–209.

van Dam NM, Samudrala D, Harren FJM & Cristescu SM (2012) Real-time analysis of sulfur- containing volatiles in Brassica plants infested with root feeding Delia radicum larvae using proton- transfer reaction mass spectrometry. Annals of Botany Plants 4: article number pls21 (12p.)

van Mölken T, de Caluwe H, Hordijk CA, Leon-Reyes A, Snoeren TAL, van Dam NM & Stuefer JF (2012) Virus infection decreases the attractiveness of white clover plants for a non-vectoring herbivore. Oecologia 170(2): 433-444.

van Putten B, Visser MD, Muller-Landau HC & Jansen PA (2012) Distorted- distance models for directional dispersal: a general framework and its application to a wind-dispersed tropical forest trees. Methods in Ecology and Evolution 3(4): 642-652

Vergeer, P., C.A.M. Wagemaker & N.J. Ouborg (2012) Evidence for an epigenetic role in inbreeding depression. Biology Letters 8(5): 798-801.

Zhu Q, Dugardeyn J, Zhang C, Takenaka M, Kühn K, Craddock C, Smalle J, Karampelias M, Denecke J, Peters J, Gerats T, Brennicke A, Eastmond P, Meyer EH & van der Straeten D (2012) Slo2, a mitochondrial pentatricopeptide repeat protein affecting several rna editing sites, is required for energy metabolism. Plant Journal 71(5):836-849