Recent Publications
Allen AM, Jongejans E, van de Pol M, Ens BJ, Frauendorf M, van der Sluijs & de Kroon H(2022) The demographic causes of population change vary across four decades in a long-lived shorebird. Ecology (in press) e3615
Çiftçi O, Alverson AJ, van Bodegom P, Roberts WR, Mertens A, Van de Vijver B, Trobajo R, Mann DG, Pirovano W, van Eijk I & Grevendeel B (2022) Phylotranscriptomics Reveals the Reticulate Evolutionary History of a Widespread Diatom Species Complex. Journal of Phycology 58(5):643-656
Çiftçi O, Wagemaker CAM, Mertens A, van Bodegom P, PirovanoW & Gravendeel B (2022) Genotyping by Sequencing for Estimating Relative Abundances of Diatom Taxa in Mock Communities. Research Square (Preprint)
Frauendorf M, Allen AM, Jongejans E, Ens BJ, Teunissen W, Kampichler C, van Turnhout CAM, Bailey LD, de Kroon H, Cremer J, Kleyheeg E, Nienhuis J, van de Pol M (2022) Love thy neighbour?—Spatial variation in density dependence of nest survival in relation to predator community. Diversity and Distributions 28(4):624-635
Gawehns F, Postuma M, Van Antro M, Nunn A, Sepers B, Fatma S, Wagemaker CAM, van Gurp TP Mateman C, Milanovic-Ivanovic S, Grosse I, van Oers K, Vergeer P & Verhoeven KJF (2022) epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS-based reduced representation bisulfite sequencing. Molecular Ecology Resources 22(5):2087-2104
Gawehns F, Postuma M, Van Antro M, Nunn A, Sepers B, Fatma S, van Gurp TP Wagemaker CAM, Mateman C, Milanovic-Ivanovic S, Grosse I, van Oers K, Vergeer P & Verhoeven KJF (2022) Data From: Test data for epiGBS. Dataset Zenodo
Gravendeel B (2022) Klimaatadaptieve stadsjungles: van dromen naar daden. Inaugurele rede 8 juni 2022 15:45, Aula Radboud Univeristeit Nijmegen
Harvey JA, Tougeron K, Gols R, Verberk WCEP, Heinen R, Hallmann C, van de Pol M, van der Putten WH, Verberk WCEP et.al. (2022) Scientists' warning on climate change and insects. Ecological Monographs (in press) e1553.
Hatim MZ, Janssen JAM, Patsch R, Shaltout K & Schaminee JHJ (2022) Phytosociological survey of the desert vegetation of Sinai, Egypt. Applied Vegetation Science 24(4):e12627
Hiemstra AF, Gravendeel B & Schilthuizen M (2021) Birds using artificial plants as nesting material . Behaviour 159:193-205
Hörren T, Sorg M, Hallmann CA, Zizka VMA, Ssymank A, Noll NW, Schäffler L & Scherber C (2022) A universal insect trait tool (ITT, v1.0) for statistical analysis and evaluation of biodiversity research data. BioRxiv (preprint)
in ‘t Zandt D, Hoekstra NJ, de Caluwe H, Cruijsen PMJM, Visser EJW & de Kroon H (2022) Plant life-history traits rather than soil legacies determine colonisation of soil patches in a multi-species grassland. Journal of Ecology 110(4):889-901
in ‘t Zandt D, Hoekstra NJ, de Caluwe H, Cruijsen PMJM, Visser EJW & de Kroon H (2022) Data for: Plant life-history traits rather than soil legacies determine colonisation of soil patches in a multi-species grassland. Dataset Dryad
in 't Zandt D, Kolaŕíkova Z, Cajthaml T & Münzbergová Z (2022) Plant community stability is associated with a decoupling of prokaryote and fungal soil networks. BioRxiv Preprint
Jansma SY, Kohlen W, Tikonov YM, Ligterink W & Rieu I (2022) Low Salicylic Acid Level Improves Pollen Development Under Long-Term Mild Heat Conditions in Tomato. Frontiers in Plant Science 13:828743
Jansma SY, Kohlen W, Tikonov YM, Ligterink W & Rieu I (2022) Data to: Low Salicylic Acid Level Improves Pollen Development Under Long-Term Mild Heat Conditions in Tomato. Dataset Gene Expression Omnibus (GEO) (GSE185583)
Jansma SY, Ligterink W & Rieu I (2022) Characterising the molecular-physiological basis of pollen abortion upon prolonged high temperature stress. Dataset Archive NCBI
Li M, Wang M, Lin Q, Wang M, Niu X, Cheng J, Xu M, Qin Y, Liao X, Xu J, Wu S (2022) Symplastic communication in the root cap directs auxin distribution to modulate root development. Journal of Integrative Plant Biology 64(4):859-870
Masters S, Anthoons B, Madesis P, Saroja SG, Schermer M, Gerritsen W, Karahan A, Verdoes R, Schwallier R, van Andel T, de Boer H & Gravendeel B (2022) Quantifying an online wildlife trade using a web crawler. Biodiversity and Conservation 31(3):855-869
Mounger JM, van Riemsdijk I, Boquete MT, Wagemaker CAM, Fatma S, Robertson MH, Voors SA, Oberstaller J, Gawehns F, Hanley TC, Grosse I, Verhoeven KJF, Sotka EE, Gehring CA, Randall Hughes A, Lewis DB, Schmid MW & Richards CL (2022) Genetic and epigenetic differentiation across intertidal gradients in the foundation plant Spartina alterniflora. Frontiers in Ecology and Evolution 10: 868826 (17 p)
Mounger JM, van Riemsdijk I, Boquete MT, Wagemaker CAM, Fatma S, Robertson MH, Voors SA, Oberstaller J, Gawehns F, Hanley TC, Grosse I, Verhoeven KJF, Sotka EE, Gehring CA, Randall Hughes A, Lewis DB, Schmid MW & Richards CL (2022) Genetic and epigenetic differentiation across intertidal gradients in the foundation plant Spartina alterniflora. Dataset Zenodo
Pan Y, Cieraad E, Armstrong J, Armstrong W, Clarkson BR, Pedersen O, Visser EJW, Voesenek LACJ & van Bodegom PM (2022) The leading trait dimensions in flood-tolerant plants. Annals of Botany 130(3):383-392
Pan Y, Cieraad E, Armstrong J, Armstrong W, Clarkson BR, Pedersen O, Visser EJW, Voesenek LACJ & van Bodegom PM (2022) Data From: The leading trait dimensions in flood-tolerant plants. Dataset Dryad
Polling M, Sin M, de Weger LA, Speksnijder AGCL, Koenders MJF, de Boer H & Gravendeel B (2022) DNA metabarcoding using nrITS2 provides highly qualitative and quantitative results for airborne pollen monitoring. Science of The Total Environment 806(Part 1):150468 (11 p)
Pramanik D, Spaans M, Kranenburg T, Bogarin D, Heijungs R, Lens F, Smets E & Gravendeel B (2022) Inflorescence lignification of natural species and horticultural hybrids of Phalaenopsis orchids. Scientia Horticulturae 295:110845 (16 p)
Sarneel JM, Hefting MM, Visser EJW, Diaz-Sierra R, Voesenek LACJ & Kowalchuk GA (2022) Species traits interact with stress level to determine intraspecific facilitation and competition. Journal of Vegetation Science 33(5):e13145
Sprague SA, Tej Man Tamang, Steiner T, Qingyu Wu, Ying Hu, Tayebeh Kakeshpour, Jungeun Park, Jian Yang, Zhao Peng, Bergkamp B, Impa Somayanda, Peterson M, Oliveira Garcia E, Yangfan Hao, St. Amand P, Guihua Bai, Nakata PA, Ivo Rieu I , Jackson DP, Ninghui Cheng, Valent B, Hirschi KD, Krishna Jagadish SV, Sanzhen Liu, White FF & Sunghun Park (2022) Redox-engineering enhances maize thermotolerance and grain yield in the field. Plant Biotechnology Journal 20(9):1819-1832
Temmink RJM, Lamers LPM, Angelini C, Bouma TJ, Fritz C, van de Koppel J, Lexmond R, Rietkerk M, Silliman BR, Joosten H & van der Heide T (2022) Recovering wetland biogeomorphic feedbacks to restore the world’s biotic carbon hotspots. Science 376(6593): eabn1479.
Tian X, Shaw R & Xu Jian (2022) Single nuclei RNA-sequencing dataset from Rice (Oryza sativa). Dataset DANS EASY
Underwood CJ, Vijverberg K, Rigola D, Okamoto S, Oplaat C, Op den Camp RHM, Radoeva T, Schauer SE, Fierens J, Jansen K, Mansveld S, Busscher M, Wi Xiong, Datema E, Nijbroek K, Blom EJ,Bicknell R, Catanach A, Erasmuson S, Winefield C, van Tunen AJ, Prins M, Schranz ME & van Dijk PJ (2022) A PARTHENOGENESIS allele from apomictic dandelion can induce egg cell division without fertilization in lettuce. Nature Genetics 54:84-93
van der Kolk HJ, Desmet P, Oosterbeek K, Allen AM, Baptist MJ, Bom RA, Davidson SC, de Jong J, de Kroon H, Dijkstra B, Dillerop R, Dokter AM, Frauendorf M, Milotić T, Rakhimberdiev E, Shamoun-Baranes J, Spanoghe G, van de Pol M, Van Ryckegem G, Vanoverbeke J, Jongejans E & Ens BJ (2022) GPS tracking data of Eurasian oystercatchers (Haematopus ostralegus) from the Netherlands and Belgium. ZooKeys 1123:31-45
van der Kolk HJ, Oosterbeek K, Jongejans E, Frauendorf M, Allen AM, Bouten W, Desmet P, de Kroon H, Ens BJ & van de Pol M (2022) Data from O_VLIELAND - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding and wintering on Vlieland (the Netherlands). Dataset Zenodo
van Irsel J, Frauendorf M, Ens BJ, van de Pol M, Troost K, Oosterbeek K, de Kroon H, Jongejans E & Allen AM (2021) Data: Individual quality and environmental effects on future reproductive performance of a threatened shorebird. Dataset Zenodo (december 2021)
van Irsel J, Frauendorf M, Ens BJ, van de Pol M, Troost K, Oosterbeek K, de Kroon H, Jongejans E & Allen AM (2022) State-dependent environmental sensitivity of reproductive success and survival in a shorebird. Ibis 164(3):692-710
Vet LEM, de Kroon H & Nuijten RJM (2022) Westhoff Lecture 2022: A breakthrough in biodiversity restoration? Westhoff Lecture 13 June 2022 Nijmegen. Conference Lecture.
Vos R, van Andel T, Gravendeel B, Kakakiou V, Michels E, Schijlen E & Stefanaki A (2022) A Tomato Genome From The Italian Renaissance Provides Insights Into Columbian and Pre-Columbian Exchange Links And Domestication. BioRxiv (Preprint)
Warrier T, EL Farran C, Yingying Zeng, Shao Quan Ho B, Don Loi Xu, Qiuye Bao, Zi Hao Zheng, Xuezhi Bi, Kelly Yu Sing Tan, Huck-Hui Ng, Derrick Sek Tong Ong, Justin Jang Hann Chu, Sanyal A, Fullwood MJ, Collins J, Hu Li, Jian Xu, Yuin Han Loh (2022) DiSCs – Domains involving SETDB1 and Cohesin are critical regulators of genome topology and stem cell fate. BioRxiv (Preprint)
Warrier T, EL Farran C, Yingying Zeng, Shao Quan Ho B, Don Loi Xu, Qiuye Bao, Zi Hao Zheng, Xuezhi Bi, Yu Sing Tan K, Huck-Hui Ng, Sek Tong Ong D, Jang Hann Chu J, Sanyal A, Fullwood MJ, Collins J, Hu Li, Jian Xu, Yuin Han Loh (2022) SETDB1 acts as a topological accessory to Cohesin via an H3K9me3-independent, genomic shunt for regulating cell fates. Nucleic Acids Research 50(13):7326-7349
Xiao TT, Kirschner GK, Kountche BA, Jamil M, Savina M, Lube V, Mironova V, Al Babili S & Blilou I (2022) A PLETHORA/PIN-FORMED/auxin network mediates prehaustorium formation in the parasitic plant Striga hermonthica. Plant Physiology 189(4): 2281-2297
Xu Jiemeng , Jansma SY, Wolters-Arts M, de Groot PFM, Jansen MJ & Rieu I (2021) Long-term mild heat causes post-mitotic pollen abortion through a local effect on flowers. Frontiers in Plant Science 13:925754 (14 p) (started in Authorea preprint)