Recent Publications

Campos M, Kelley E, Gravendeel B, Médail F, Christenhusz JMM, Fay MF, Catalán P, Leitch I, Forest F, Wilkin P & Viruel J (2023) Genomic, spatial and morphometric data for discrimination of four species in the Mediterranean Tamus clade of yams (Dioscorea, Dioscoreaceae). Annals of Botany 131(4):635-654

Chang CH, Wang WG, Su PY, Chen YS, Nguyen TP, Xu J, Ohme-Takagi M, Mimura T, Hou PF & Huang HJ (2023) The involvement of AtMKK1 and AtMKK3 in plant-deleterious microbial volatile compounds-induced defense responses. Plant Molecular Biology 111:21–36

Çiftçi O, Wagemaker CAM, Mertens A, van Bodegom P, PirovanoW & Gravendeel B (2022) Genotyping by Sequencing for Estimating Relative Abundances of Diatom Taxa in Mock Communities. BMC Ecology and Evolution 23: 4 (12 p.)

Gallego-Zamorano J, de Jonge MMJ, Runge K, Huls SH, Wang J, Huijbregts MAJ & Schipper AM (2023) Context-dependent responses of terrestrial invertebrates to anthropogenic nitrogen enrichment: A meta-analysis. Global Change Biology 29: 4161-4173

Hörren T, Sorg M, Hallmann CA, Zizka VMA, Ssymank A, Noll NW, Schäffler L & Scherber C (2022) A universal insect trait tool (ITT, v1.0) for statistical analysis and evaluation of biodiversity research data. BioRxiv (preprint)

Huls SH, Visser EJW & de Kroon H (2023) Future dikes: species rich and sustainable riverdike grass covers. p. 52-53. In: Verberk W, Collas F, Geerling GW & Petersdorf MC (Eds.)(2023) NCR Days 2023: Towards 2048: The next 25 years of river studies. Book of Abstracts NCR Days 2023. Lindenberg Cultuurhuis/Radboud University, 12-13 April 2023, Nijmegen. NCR Publications 51-2023. 138 p.

Ibañez VN, van Antro M, Peña-Ponton C, Milanovic-Ivanovic S, Wagemaker CAM< Gawehns F & Verhoeven KJF (2023) Environmental and genealogical effects on DNA methylation in a widespread apomictic dandelion lineage. Journal of Evolutionary Biology 36:663-674

Jahanbanifard M, E. Price, B.A. González, L.A. Raggi, S.Javanmardi, F. Lens, B. Gravendeel, E. Espinoza & F.J. Verbeek (2023) A novel method to analyse DART TOFMS spectra based on Convolutional Neural Networks: A case study on methanol extracts of wool fibres from endangered camelids. International Journal of Mass Spectrometry 489:117050 (8 pages)

Kambach S, Sabatini FM, Attore F, Biurrun I, Boenisch G, Bonari G, Čarni A, Carranza ML, Chiarucci A, Chytrý M, Dengler J, Carbolino E, Golub V, Jandt U, Jansen J, Jašcová A, Jiménez-Alfaro B, Karger DN, Kattge J, Knollova I, Midolo G, Erenskjold Moeslund J, Pielech R, Rašomavičius V, Rüsina S, Šibík J, Stančic Z, Stanisci A, Svenning JC, Yamalov S, Zimmermann NE & Bruelheide H (2023) Climate-trait relationships exhibit strong habitat specificity in plant communities across Europe. Nature Communications 14: 712 (11 p.)

Latzel V, Fischer M, Groot M, Gutzat R, Lampei C, Ouborg NJ, Parepa M, Schmid K, Vergeer P, Zhang Y & Bossdorf O (2023) Parental environmental effects are common and strong, but unpredictable, in Arabidopsis thaliana. New Phytologist 237(3):1014-1023

Lenssen J & Jansen J (2023) Snelle kolonisatie door bosplanten langs de Boven-Slinge. De Levende Natuur 123(1):5-9 https://delevendenatuurmagazine.nl/de-levende-natuur-nummer-01-2023/snelle-kolonisatie-door-bosplanten-langs-de-boven-slinge/

Li C (Chen), Polling M, Cao L (Lu), Gravendeel B & Verbeek FJ (2023) Analysis of Automatic Image Classification Methods for Urticaceae Pollen Classification. Neurocomputing 522:181-193

Maiti R, Shaw R, Cheung CYM & Kundu S (2023) Metabolic modelling revealed source–sink interactions between four segments of Setaria viridis leaves. Journal of Biosciences 48:26 (13 pages)

Nidup T, Wangchuck K, Tobgay S, Wangchuck T, Kalkman VJ & Gravendeel B (2023) Pollinators of Epiphytic and Terrestrial Orchid Species in Bhutan. Sherub Doenme: The Research Journal of Sherubtse College 16:18-33

Schwarz IA, Neumann M, Vega R, Xiaocai Xu, Cornero L, Colombo L, Vernoux T, Jian Xu, Marquardt S & Kaufmann K (2022) From Single Cells to Flowers – Biological Complexity Driving Plant Reproductive Development. MDPI (Preprint)

Sur M, Hall JC, Brandt J, Astell M, Poessel SA & Katzner TE (2023) Supervised versus unsupervised approaches to classification of accelerometry data. Ecology and Evolution 13:e10035 (11 pages)

Tak DBY, Vroom RJE , Lexmond R, Lamers LPM, Robroek BJM & Temmink RJM (2023) Water level and vegetation type control carbon fluxes in a newly-constructed soft-sediment wetland. Wetlands Ecology and Management 31: 583-594

Van Antro M, Prelovsek S, Ivanocvic S, Gawhns F, Wagemaker CAM, Mysara M, Horemans N, Vergeer P & Verhoeven KJF (2023) DNA methylation in clonal duckweed (Lemna minor L.) lineages reflects current and historical environmental exposures. Molecular Ecology 32(2):428-443

Van Antro M, Prelovsek S, Ivanocvic S, Gawhns F, Wagemaker CAM, Mysara M, Horemans N, Vergeer P & Verhoeven KJF (2023) Data to: DNA methylation in clonal duckweed (Lemna minor L.) lineages reflects current and historical environmental exposures. Dataset Zenodo

Van der Hagen H, Lammers E, van der meulen F, Pätsch R, van Rooijen, Sýkora KV & Schaminée JHJ (2023) The role of livestock grazing in long-term vegetation changes in coastal dunes: a case study from the Netherlands. Plant Sociology 60(1):1-12

Van der Plas F, Schröder-Georgi T, Weigelt A, Barry K, Meyer S, Alzate A, Barnard RL, Buchmann N, de kroon H, Eberling A, Eisenhauer N, Engels C, Fischer M, Gleixner G, Hildebrandt A, Koller-France E, Leimer S, Milcu A, Mommer L, Niklaus PA, Oelmann Y, Roscher C, Scherber C, Scheren-Lorenzen M, Scheu S, Schmid B, Schulze ED, Temperton V, Tscharntke T, Voigt W, Weisser W, Wilcke W & Wirth C (2023) Reply to: Plant traits alone are good predictors of ecosystem properties when used carefully. Nature Ecology & Evolution 7:332-334

Van der Plas F, Schröder-Georgi T, Weigelt A, Barry K, Meyer S, Alzate A, Barnard RL, Buchmann N, de kroon H, Eberling A, Eisenhauer N, Engels C, Fischer M, Gleixner G, Hildebrandt A, Koller-France E, Leimer S, Milcu A, Mommer L, Niklaus PA, Oelmann Y, Roscher C, Scherber C, Scheren-Lorenzen M, Scheu S, Schmid B, Schulze ED, Temperton V, Tscharntke T, Voigt W, Weisser W, Wilcke W & Wirth C (2023) Data to: Reply to: Plant traits alone are good predictors of ecosystem properties when used carefully. Dataset Figshare

Viruel J, Hidalgo O, Pokorny L, Forest F, Gravendeel B, Wilkin B & Leitch IJ (2023) A Bioinformatic Pipeline to Estimate Ploidy Level from Target Capture Sequence Data Obtained from Herbarium Specimens. Part II, p. 115-126. In: Heitkam T & Garcia S (Eds.) Plant Cytogenetics and Cytogenomics Methods and Protocols. ISBN 978-1-0716-3226-0. p. XVIII, 568. Series Methods in Molecular Biology Vol. 2672. Series ISSN 1064-3745. Humana New York, NY

Visschers IGS, Macel M, Peters JL, Segeeva L, Bruin J & van Dam NM (2023) Exploring Thrips Preference and Resistance in Flowers, Leaves, and Whole Plants of Ten Capsicum Accessions. Plants (Basel) 12(4): 825 (16 p.)

Vos R, van Andel T, Gravendeel B, Kakakiou V, Michels E, Schijlen E & Stefanaki A (2022) A Tomato Genome From The Italian Renaissance Provides Insights Into Columbian and Pre-Columbian Exchange Links And Domestication. BioRxiv (Preprint)

Wati RK, Gravendeel B, Langelaan R, van Heuven BJ, Claessens J, Kleynen J, Smets EF, de Winter AJ & van der Meijden A (2023) Orchids reduce attachment of herbivorous snails with leaf trichomes. PLoS ONE 18(8): e0285731

Woudstra Y, Kraaiveld R, Jorritsma A, Vijverberg K, Ivanovic S, Erkens R, Huber H, Gravendeel B & Verhoeven KJF (2023) Some like it hot: adaptation to the urban heat island in common dandelion. BioRxiv (Preprint)

Yao Yi, Yingying Zeng, Tsz Wing Sam, Kiyofumi Hamashima, Rachel Jun Rou Tan, Tushar Warrier, Jun Xiang Phua, Reshma Taneja, Yih-Cherng Liou, Hu Li, Jian Xu, Yuin-Han Loh (2023) Ribosomal proteins regulate 2-cell-stage transcriptome in mouse embryonic stem cells. STEM CELL REPORTS 18(2):463-474